1. Home
  2. Species
  3. Selaginella moellendorffii
  4. Sequence
  5. 20633

20633


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 20633
Cluster HCCA clusters: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G236700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
MA_115669g0020 No alias (at4g18750 : 620.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_211508g0010 No alias (at4g18750 : 505.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_3471g0010 No alias (at4g13650 : 601.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_39595g0010 No alias (at1g08070 : 552.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Predicted GO
BP GO:0006471 protein ADP-ribosylation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 324 350
IPR002885 Pentatricopeptide_repeat 5 30
IPR002885 Pentatricopeptide_repeat 352 382
IPR002885 Pentatricopeptide_repeat 76 96
IPR002885 Pentatricopeptide_repeat 526 550
IPR002885 Pentatricopeptide_repeat 105 131
IPR002885 Pentatricopeptide_repeat 222 246
IPR002885 Pentatricopeptide_repeat 452 498
IPR002885 Pentatricopeptide_repeat 149 197
IPR002885 Pentatricopeptide_repeat 248 295
No external refs found!