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Description : Ribosomal protein L1p/L10e family
Gene families : OG_42_0001635 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001635_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Selaginella: 230302 | |
| Cluster | HCCA clusters: Cluster_23 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_21782 | No alias | 60s ribosomal protein l10a-1 | 0.11 | Orthogroups_2024-Update | |
| At5g22440 | No alias | 60S ribosomal protein L10a-3... | 0.05 | Orthogroups_2024-Update | |
| Bradi2g55600 | No alias | Ribosomal protein L1p/L10e family | 0.08 | Orthogroups_2024-Update | |
| Bradi3g42800 | No alias | Ribosomal protein L1p/L10e family | 0.12 | Orthogroups_2024-Update | |
| Brara.B00972.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Brara.C01003.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.22 | Orthogroups_2024-Update | |
| Brara.D01641.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.21 | Orthogroups_2024-Update | |
| Brara.G01318.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.06 | Orthogroups_2024-Update | |
| Brara.J01470.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.16 | Orthogroups_2024-Update | |
| Cre02.g101350 | No alias | Ribosomal protein L1p/L10e family | 0.18 | Orthogroups_2024-Update | |
| GRMZM2G023748 | No alias | Ribosomal protein L1p/L10e family | 0.03 | Orthogroups_2024-Update | |
| Glyma.11G231000 | No alias | Ribosomal protein L1p/L10e family | 0.06 | Orthogroups_2024-Update | |
| Glyma.12G184900 | No alias | Ribosomal protein L1p/L10e family | 0.1 | Orthogroups_2024-Update | |
| Glyma.13G316400 | No alias | Ribosomal protein L1p/L10e family | 0.15 | Orthogroups_2024-Update | |
| Glyma.18G026100 | No alias | Ribosomal protein L1p/L10e family | 0.19 | Orthogroups_2024-Update | |
| Glyma.19G194922 | No alias | Ribosomal protein L1p/L10e family | 0.08 | Orthogroups_2024-Update | |
| HORVU3Hr1G084310.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| HORVU4Hr1G001350.5 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.15 | Orthogroups_2024-Update | |
| HORVU7Hr1G059090.5 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.1 | Orthogroups_2024-Update | |
| Kfl00440_0070 | kfl00440_0070_v1.... | (at2g27530 : 310.0) Encodes ribosomal protein L10aP.... | 0.15 | Orthogroups_2024-Update | |
| LOC_Os02g21660 | No alias | L1P family of ribosomal proteins domain containing... | 0.05 | Orthogroups_2024-Update | |
| MA_12000g0010 | No alias | (at5g22440 : 343.0) Ribosomal protein L1p/L10e family;... | 0.09 | Orthogroups_2024-Update | |
| MA_71921g0010 | No alias | (at1g08360 : 345.0) Ribosomal protein L1p/L10e family;... | 0.1 | Orthogroups_2024-Update | |
| Mp3g07650.1 | No alias | component RPL10a of LSU proteome component | 0.08 | Orthogroups_2024-Update | |
| PSME_00037360-RA | No alias | (at1g08360 : 341.0) Ribosomal protein L1p/L10e family;... | 0.11 | Orthogroups_2024-Update | |
| Potri.004G202766 | No alias | Ribosomal protein L1p/L10e family | 0.03 | Orthogroups_2024-Update | |
| Potri.004G202832 | No alias | Ribosomal protein L1p/L10e family | 0.12 | Orthogroups_2024-Update | |
| Potri.007G034800 | No alias | Ribosomal protein L1p/L10e family | 0.13 | Orthogroups_2024-Update | |
| Potri.007G035600 | No alias | Ribosomal protein L1p/L10e family | 0.05 | Orthogroups_2024-Update | |
| Pp1s18_121V6 | No alias | 60s ribosomal protein l10a-1 | 0.08 | Orthogroups_2024-Update | |
| Pp1s40_297V6 | No alias | 60s ribosomal protein l10a-1 | 0.1 | Orthogroups_2024-Update | |
| Pp1s427_1V6 | No alias | 60s ribosomal protein l10a-1 | 0.02 | Orthogroups_2024-Update | |
| Seita.2G133400.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
| Seita.5G389700.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.15 | Orthogroups_2024-Update | |
| Seita.6G243700.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G363800.2 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.19 | Orthogroups_2024-Update | |
| Solyc01g009520 | No alias | Ribosomal protein (AHRD V3.3 *** K4ATE8_SOLLC) | 0.13 | Orthogroups_2024-Update | |
| Solyc06g074300 | No alias | 5'-3' exonuclease family protein (AHRD V3.3 --* AT3G28030.4) | 0.19 | Orthogroups_2024-Update | |
| Solyc11g068420 | No alias | Ribosomal protein (AHRD V3.3 *** M1CHW0_SOLTU) | 0.17 | Orthogroups_2024-Update | |
| Sopen01g005070 | No alias | Ribosomal protein L1p/L10e family | 0.22 | Orthogroups_2024-Update | |
| Sopen06g030750 | No alias | Ribosomal protein L1p/L10e family | 0.15 | Orthogroups_2024-Update | |
| Sopen11g027130 | No alias | Ribosomal protein L1p/L10e family | 0.16 | Orthogroups_2024-Update | |
| evm.model.contig_2315.2 | No alias | (at2g27530 : 237.0) Encodes ribosomal protein L10aP.... | 0.27 | Orthogroups_2024-Update | |
| evm.model.tig00020697.31 | No alias | (at5g22440 : 146.0) Ribosomal protein L1p/L10e family;... | 0.05 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0001671 | ATPase activator activity | IEP | Predicted GO |
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003724 | RNA helicase activity | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
| MF | GO:0003922 | GMP synthase (glutamine-hydrolyzing) activity | IEP | Predicted GO |
| MF | GO:0004004 | ATP-dependent RNA helicase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005622 | intracellular | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006177 | GMP biosynthetic process | IEP | Predicted GO |
| BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006771 | riboflavin metabolic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| MF | GO:0008026 | ATP-dependent helicase activity | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| MF | GO:0008186 | RNA-dependent ATPase activity | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009119 | ribonucleoside metabolic process | IEP | Predicted GO |
| BP | GO:0009163 | nucleoside biosynthetic process | IEP | Predicted GO |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | Predicted GO |
| CC | GO:0009349 | riboflavin synthase complex | IEP | Predicted GO |
| CC | GO:0009507 | chloroplast | IEP | Predicted GO |
| CC | GO:0009536 | plastid | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
| MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0042278 | purine nucleoside metabolic process | IEP | Predicted GO |
| BP | GO:0042451 | purine nucleoside biosynthetic process | IEP | Predicted GO |
| BP | GO:0042455 | ribonucleoside biosynthetic process | IEP | Predicted GO |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0046037 | GMP metabolic process | IEP | Predicted GO |
| BP | GO:0046128 | purine ribonucleoside metabolic process | IEP | Predicted GO |
| BP | GO:0046129 | purine ribonucleoside biosynthetic process | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| MF | GO:0051087 | chaperone binding | IEP | Predicted GO |
| MF | GO:0060590 | ATPase regulator activity | IEP | Predicted GO |
| MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Predicted GO |
| BP | GO:0071103 | DNA conformation change | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:1901068 | guanosine-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:1901070 | guanosine-containing compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| BP | GO:1901659 | glycosyl compound biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR028364 | Ribosomal_L1/biogenesis | 23 | 210 |
| No external refs found! |