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  4. Sequence
  5. 236978

236978


Description : expansin A16


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 236978
Cluster HCCA clusters: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
A4A49_04302 No alias expansin-a10 0.02 Orthogroups_2024-Update
A4A49_27627 No alias expansin-a4 0.02 Orthogroups_2024-Update
A4A49_38718 No alias expansin-a7 0.03 Orthogroups_2024-Update
At3g29030 No alias At3g29030 [Source:UniProtKB/TrEMBL;Acc:Q1ECM3] 0.04 Orthogroups_2024-Update
Bradi2g22290 No alias expansin A1 0.04 Orthogroups_2024-Update
Bradi3g09950 No alias expansin 11 0.03 Orthogroups_2024-Update
Bradi3g59460 No alias expansin A1 0.03 Orthogroups_2024-Update
Glyma.05G025600 No alias expansin A1 0.02 Orthogroups_2024-Update
Glyma.06G021700 No alias expansin 11 0.02 Orthogroups_2024-Update
LOC_Os01g14650 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g15840 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_792493g0010 No alias (at1g69530 : 351.0) Member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
PSME_00006372-RA No alias (at4g01630 : 153.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00050247-RA No alias (at2g40610 : 400.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00051669-RA No alias (at2g40610 : 425.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00052085-RA No alias (at1g69530 : 372.0) Member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
Potri.006G108000 No alias expansin A8 0.02 Orthogroups_2024-Update
Seita.9G342900.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.001G033300.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.004G121900.1 No alias alpha-class expansin 0.05 Orthogroups_2024-Update
Sobic.004G238801.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004181 metallocarboxypeptidase activity IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 160 237
IPR009009 RlpA-like_DPBB 68 149
No external refs found!