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  5. 266803

266803


Description : rhamnose biosynthesis 1


Gene families : OG_42_0000886 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000886_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Selaginella: 266803
Cluster HCCA clusters: Cluster_98

Target Alias Description ECC score Gene Family Method Actions
Bradi2g39820 No alias NAD-dependent epimerase/dehydratase family protein 0.03 Orthogroups_2024-Update
Bradi3g08850 No alias rhamnose biosynthesis 1 0.02 Orthogroups_2024-Update
Brara.F01189.1 No alias UDP-L-rhamnose synthase *(RHM) 0.03 Orthogroups_2024-Update
Glyma.12G234300 No alias rhamnose biosynthesis 1 0.03 Orthogroups_2024-Update
Glyma.13G264500 No alias rhamnose biosynthesis 1 0.03 Orthogroups_2024-Update
Potri.003G120000 No alias nucleotide-rhamnose synthase/epimerase-reductase 0.03 Orthogroups_2024-Update
Sobic.001G416600.1 No alias UDP-L-rhamnose synthase *(RHM) 0.03 Orthogroups_2024-Update
Solyc08g080140 No alias 3,5-epimerase/4-reductase (AHRD V3.3 *** I3SMF8_MEDTR) 0.02 Orthogroups_2024-Update
evm.model.tig00020553.161 No alias (at1g63000 : 180.0) nucleotide-rhamnose... 0.01 Orthogroups_2024-Update
evm.model.tig00021464.17 No alias (at1g53500 : 393.0) encodes a putative NDP-L-rhamnose... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0004619 phosphoglycerate mutase activity IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006007 glucose catabolic process IEP Predicted GO
BP GO:0006353 DNA-templated transcription, termination IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0009055 electron transfer activity IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0019320 hexose catabolic process IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
BP GO:0046365 monosaccharide catabolic process IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR016040 NAD(P)-bd_dom 20 323
IPR029903 RmlD-like-bd 387 562
No external refs found!