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  5. 271833

271833


Description : light harvesting complex photosystem II subunit 6


Gene families : OG_42_0005004 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 271833
Cluster HCCA clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
A4A49_19796 No alias chlorophyll a-b binding protein cp24 10a, chloroplastic 0.04 Orthogroups_2024-Update
At1g15820 No alias Chlorophyll a-b binding protein, chloroplastic... 0.05 Orthogroups_2024-Update
Bradi5g12150 No alias light harvesting complex photosystem II subunit 6 0.03 Orthogroups_2024-Update
Brara.F01095.1 No alias component *(LHCb6) of LHC-II complex 0.02 Orthogroups_2024-Update
Brara.H02525.1 No alias component *(LHCb6) of LHC-II complex 0.03 Orthogroups_2024-Update
Brara.I04910.1 No alias component *(LHCb6) of LHC-II complex 0.03 Orthogroups_2024-Update
GRMZM2G088983 No alias light harvesting complex photosystem II subunit 6 0.05 Orthogroups_2024-Update
GRMZM2G092427 No alias light harvesting complex photosystem II subunit 6 0.03 Orthogroups_2024-Update
Glyma.08G074000 No alias light harvesting complex photosystem II subunit 6 0.04 Orthogroups_2024-Update
Glyma.08G180000 No alias light harvesting complex photosystem II subunit 6 0.03 Orthogroups_2024-Update
Glyma.15G052400 No alias light harvesting complex photosystem II subunit 6 0.04 Orthogroups_2024-Update
HORVU2Hr1G079920.4 No alias component *(LHCb6) of LHC-II complex 0.04 Orthogroups_2024-Update
Kfl00276_0010 kfl00276_0010_v1.1 (at1g15820 : 338.0) Lhcb6 protein (Lhcb6), light... 0.02 Orthogroups_2024-Update
LOC_Os04g38410 No alias chlorophyll A-B binding protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.001G210000 No alias light harvesting complex photosystem II subunit 6 0.03 Orthogroups_2024-Update
Pp1s28_315V6 No alias chloroplast light-harvesting complex ii protein 0.03 Orthogroups_2024-Update
Pp1s28_319V6 No alias chloroplast light-harvesting complex ii protein 0.03 Orthogroups_2024-Update
Seita.7G121800.1 No alias component *(LHCb6) of LHC-II complex 0.05 Orthogroups_2024-Update
Sobic.006G264201.1 No alias component *(LHCb6) of LHC-II complex 0.04 Orthogroups_2024-Update
Solyc01g105030 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.05 Orthogroups_2024-Update
Solyc01g105050 No alias Chlorophyll a-b binding protein, chloroplastic (AHRD... 0.04 Orthogroups_2024-Update
Sopen01g047560 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update
Sopen01g047580 No alias Chlorophyll A-B binding protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0004489 methylenetetrahydrofolate reductase (NAD(P)H) activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 71 247
No external refs found!