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  5. 30095

30095


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 30095
Cluster HCCA clusters: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Brara.B00112.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G462625 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G102000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.16G172800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU4Hr1G067540.5 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G067620.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os04g02850 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g07620 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00002640-RA No alias (at4g13650 : 724.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00022404-RA No alias (at3g57430 : 647.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00035796-RA No alias (at1g11290 : 732.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00037812-RA No alias (at4g13650 : 600.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Seita.7G139500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G016300.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen04g008620 No alias PPR repeat 0.01 Orthogroups_2024-Update
Sopen07g004410 No alias PPR repeat family 0.01 Orthogroups_2024-Update
Sopen09g004550 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen09g022760 No alias PPR repeat 0.01 Orthogroups_2024-Update
Sopen09g027460 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0045765 regulation of angiogenesis IEP Predicted GO
BP GO:0050793 regulation of developmental process IEP Predicted GO
BP GO:0051239 regulation of multicellular organismal process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:1901342 regulation of vasculature development IEP Predicted GO
BP GO:2000026 regulation of multicellular organismal development IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 611 735
IPR002885 Pentatricopeptide_repeat 234 282
IPR002885 Pentatricopeptide_repeat 32 79
IPR002885 Pentatricopeptide_repeat 134 180
IPR002885 Pentatricopeptide_repeat 339 383
IPR002885 Pentatricopeptide_repeat 106 129
IPR002885 Pentatricopeptide_repeat 310 335
IPR002885 Pentatricopeptide_repeat 439 460
IPR002885 Pentatricopeptide_repeat 6 31
No external refs found!