Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Selaginella: 30095 | |
Cluster | HCCA clusters: Cluster_106 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Brara.B00112.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
GRMZM2G462625 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.02G102000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.16G172800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU4Hr1G067540.5 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU6Hr1G067620.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
LOC_Os04g02850 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os07g07620 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
PSME_00002640-RA | No alias | (at4g13650 : 724.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
PSME_00022404-RA | No alias | (at3g57430 : 647.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
PSME_00035796-RA | No alias | (at1g11290 : 732.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
PSME_00037812-RA | No alias | (at4g13650 : 600.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
Seita.7G139500.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.001G016300.2 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Sopen04g008620 | No alias | PPR repeat | 0.01 | Orthogroups_2024-Update | |
Sopen07g004410 | No alias | PPR repeat family | 0.01 | Orthogroups_2024-Update | |
Sopen09g004550 | No alias | PPR repeat family | 0.05 | Orthogroups_2024-Update | |
Sopen09g022760 | No alias | PPR repeat | 0.01 | Orthogroups_2024-Update | |
Sopen09g027460 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
CC | GO:0005667 | transcription factor complex | IEP | Predicted GO |
CC | GO:0005669 | transcription factor TFIID complex | IEP | Predicted GO |
CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Predicted GO |
BP | GO:0022603 | regulation of anatomical structure morphogenesis | IEP | Predicted GO |
BP | GO:0032774 | RNA biosynthetic process | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044428 | nuclear part | IEP | Predicted GO |
CC | GO:0044451 | nucleoplasm part | IEP | Predicted GO |
CC | GO:0044798 | nuclear transcription factor complex | IEP | Predicted GO |
BP | GO:0045765 | regulation of angiogenesis | IEP | Predicted GO |
BP | GO:0050793 | regulation of developmental process | IEP | Predicted GO |
BP | GO:0051239 | regulation of multicellular organismal process | IEP | Predicted GO |
CC | GO:0090575 | RNA polymerase II transcription factor complex | IEP | Predicted GO |
BP | GO:1901342 | regulation of vasculature development | IEP | Predicted GO |
BP | GO:2000026 | regulation of multicellular organismal development | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR032867 | DYW_dom | 611 | 735 |
IPR002885 | Pentatricopeptide_repeat | 234 | 282 |
IPR002885 | Pentatricopeptide_repeat | 32 | 79 |
IPR002885 | Pentatricopeptide_repeat | 134 | 180 |
IPR002885 | Pentatricopeptide_repeat | 339 | 383 |
IPR002885 | Pentatricopeptide_repeat | 106 | 129 |
IPR002885 | Pentatricopeptide_repeat | 310 | 335 |
IPR002885 | Pentatricopeptide_repeat | 439 | 460 |
IPR002885 | Pentatricopeptide_repeat | 6 | 31 |
No external refs found! |