30579


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 30579
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
HORVU1Hr1G058280.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os07g13540 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
LOC_Os07g39910 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
MA_124868g0020 No alias (at4g13650 : 517.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_16457g0010 No alias (at2g22070 : 558.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_43727g0010 No alias (at3g02010 : 679.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00056680-RA No alias (at2g22070 : 511.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Potri.009G037600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s186_64V6 No alias hypothetical protein [Oryza sativa (japonica cultivar-group)] 0.02 Orthogroups_2024-Update
Seita.9G375400.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 315 362
IPR002885 Pentatricopeptide_repeat 415 463
IPR002885 Pentatricopeptide_repeat 3 32
IPR002885 Pentatricopeptide_repeat 222 247
IPR002885 Pentatricopeptide_repeat 34 62
IPR002885 Pentatricopeptide_repeat 253 281
IPR002885 Pentatricopeptide_repeat 65 93
IPR002885 Pentatricopeptide_repeat 191 220
IPR002885 Pentatricopeptide_repeat 127 156
IPR002885 Pentatricopeptide_repeat 388 411
IPR002885 Pentatricopeptide_repeat 158 174
IPR002885 Pentatricopeptide_repeat 96 121
IPR002885 Pentatricopeptide_repeat 285 312
No external refs found!