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  4. Sequence
  5. 328

328


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 328
Cluster HCCA clusters: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
MA_10248752g0010 No alias (at3g23330 : 422.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_141034g0010 No alias (at4g33170 : 601.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_211508g0010 No alias (at4g18750 : 505.0) Encodes a pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
MA_9258g0010 No alias (at4g13650 : 664.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Seita.7G042500.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0042802 identical protein binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 770 817
IPR002885 Pentatricopeptide_repeat 667 713
IPR002885 Pentatricopeptide_repeat 371 418
IPR002885 Pentatricopeptide_repeat 168 215
IPR002885 Pentatricopeptide_repeat 568 616
IPR002885 Pentatricopeptide_repeat 66 113
IPR002885 Pentatricopeptide_repeat 844 868
IPR002885 Pentatricopeptide_repeat 271 299
IPR002885 Pentatricopeptide_repeat 544 565
IPR002885 Pentatricopeptide_repeat 641 666
IPR002885 Pentatricopeptide_repeat 443 470
IPR002885 Pentatricopeptide_repeat 142 164
IPR002885 Pentatricopeptide_repeat 41 62
IPR002885 Pentatricopeptide_repeat 244 265
IPR002885 Pentatricopeptide_repeat 744 769
IPR002885 Pentatricopeptide_repeat 345 370
IPR002885 Pentatricopeptide_repeat 471 500
No external refs found!