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  5. Solyc01g106710

Solyc01g106710


Description : Transcription factor, MADS-box (AHRD V3.3 *** A0A103YIH6_CYNCS)


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g106710
Cluster HCCA clusters: Cluster_303

Target Alias Description ECC score Gene Family Method Actions
A4A49_14436 No alias agamous-like mads-box protein agl11 0.02 Orthogroups_2024-Update
LOC_Os02g36924 No alias OsMADS27 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g38780 No alias transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
Seita.3G098400.1 No alias MADS/AGL-type transcription factor 0.01 Orthogroups_2024-Update
Sobic.003G379000.1 No alias component *(PISTILLATA) of AP3-PISTILLATA organ-identity... 0.02 Orthogroups_2024-Update
Sobic.009G102200.2 No alias MADS/AGL-type transcription factor 0.01 Orthogroups_2024-Update
Solyc01g106730 No alias MADS-box transcription factor family protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc08g067230 No alias MADS box transcription factor (AHRD V3.3 *** G3EIU8_9SOLA) 0.02 Orthogroups_2024-Update
Solyc10g017630 No alias MADS-box transcription factor (AHRD V3.3 *** Q1EMR8_PLAMJ) 0.02 Orthogroups_2024-Update
Sopen02g033990 No alias SRF-type transcription factor (DNA-binding and... 0.03 Orthogroups_2024-Update
Sopen03g033910 No alias K-box region 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
BP GO:0009790 embryo development IEP Predicted GO
BP GO:0010109 regulation of photosynthesis IEP Predicted GO
BP GO:0042548 regulation of photosynthesis, light reaction IEP Predicted GO
BP GO:0042549 photosystem II stabilization IEP Predicted GO
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 16 63
No external refs found!