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  5. Sopen01g021730

Sopen01g021730


Description : PPR repeat family


Gene families : OG_42_0001418 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001418_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Solanum release: Sopen01g021730
Cluster HCCA clusters: Cluster_125

Target Alias Description ECC score Gene Family Method Actions
Bradi1g77530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G071162 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G007500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G039500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
MA_10431478g0010 No alias (at5g48730 : 477.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Potri.010G153900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G009700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G568800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G532900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.002G013700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g057200 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc12g098990 No alias Pentatricopeptide repeat-containing protein, putative... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 414 460
IPR002885 Pentatricopeptide_repeat 308 355
IPR002885 Pentatricopeptide_repeat 171 215
IPR002885 Pentatricopeptide_repeat 277 306
IPR002885 Pentatricopeptide_repeat 243 267
IPR002885 Pentatricopeptide_repeat 135 164
No external refs found!