Description : glycine-rich RNA-binding protein 4
Gene families : OG_42_0000107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000107_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Selaginella: 406315 | |
Cluster | HCCA clusters: Cluster_54 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
81392 | No alias | glycine-rich RNA-binding protein 3 | 0.02 | Orthogroups_2024-Update | |
At3g23830 | No alias | GRP4 [Source:UniProtKB/TrEMBL;Acc:A0A178VD35] | 0.02 | Orthogroups_2024-Update | |
Brara.B00201.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Brara.J00926.1 | No alias | RNA editing factor *(ORRM2) | 0.02 | Orthogroups_2024-Update | |
Brara.J01355.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
GRMZM2G113513 | No alias | RNA binding (RRM/RBD/RNP motifs) family protein | 0.02 | Orthogroups_2024-Update | |
Glyma.03G172300 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.08 | Orthogroups_2024-Update | |
Glyma.06G263200 | No alias | RNA-binding (RRM/RBD/RNP motifs) family protein | 0.04 | Orthogroups_2024-Update | |
HORVU3Hr1G092880.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU5Hr1G089190.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
LOC_Os12g43600 | No alias | RNA recognition motif containing protein, expressed | 0.04 | Orthogroups_2024-Update | |
MA_77292g0010 | No alias | (at5g54580 : 113.0) RNA-binding (RRM/RBD/RNP motifs)... | 0.03 | Orthogroups_2024-Update | |
PSME_00033320-RA | No alias | (at5g54580 : 117.0) RNA-binding (RRM/RBD/RNP motifs)... | 0.04 | Orthogroups_2024-Update | |
Potri.001G319800 | No alias | glycine-rich RNA-binding protein 2 | 0.03 | Orthogroups_2024-Update | |
Potri.017G059000 | No alias | glycine-rich RNA-binding protein 2 | 0.03 | Orthogroups_2024-Update | |
Sobic.001G417400.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
Solyc02g066930 | No alias | RNA-binding protein (AHRD V3.3 *** Q941H9_TOBAC) | 0.02 | Orthogroups_2024-Update | |
Solyc10g051390 | No alias | RNA-binding glycine-rich protein (AHRD V3.3 *** D6PZY6_TOBAC) | 0.02 | Orthogroups_2024-Update | |
Sopen02g016120 | No alias | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 0.02 | Orthogroups_2024-Update | |
Sopen05g032250 | No alias | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 0.02 | Orthogroups_2024-Update | |
Sopen07g024600 | No alias | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 0.03 | Orthogroups_2024-Update | |
Sopen10g032720 | No alias | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
CC | GO:0005575 | cellular_component | IEP | Predicted GO |
CC | GO:0005622 | intracellular | IEP | Predicted GO |
CC | GO:0005840 | ribosome | IEP | Predicted GO |
BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Predicted GO |
BP | GO:0006412 | translation | IEP | Predicted GO |
BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
MF | GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | IEP | Predicted GO |
MF | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | IEP | Predicted GO |
BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
CC | GO:0030880 | RNA polymerase complex | IEP | Predicted GO |
CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
CC | GO:0043226 | organelle | IEP | Predicted GO |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
CC | GO:0044424 | intracellular part | IEP | Predicted GO |
CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
CC | GO:0044464 | cell part | IEP | Predicted GO |
MF | GO:0051213 | dioxygenase activity | IEP | Predicted GO |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | Predicted GO |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
CC | GO:1990234 | transferase complex | IEP | Predicted GO |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000504 | RRM_dom | 22 | 92 |
No external refs found! |