Sopen01g022060

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0001591 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001591_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g022060
Cluster	HCCA clusters: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
Sopen01g009760	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.06	Orthogroups_2024-Update
Sopen01g029550	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.06	Orthogroups_2024-Update
Sopen02g005470	No alias	Zinc knuckle	0.02	Orthogroups_2024-Update
Sopen02g007750	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.02	Orthogroups_2024-Update
Sopen05g009310	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen06g009840	No alias	gag-polypeptide of LTR copia-type	0.06	Orthogroups_2024-Update
Sopen07g022560	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.03	Orthogroups_2024-Update
Sopen10g012070	No alias	Integrase core domain	0.04	Orthogroups_2024-Update
Sopen11g019730	No alias	Reverse transcriptase (RNA-dependent DNA polymerase)	0.07	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR025724	GAG-pre-integrase_dom	404	452
IPR001584	Integrase_cat-core	470	583
IPR001878	Znf_CCHC	230	246
IPR013103	RVT_2	663	790

External Links

No external refs found!