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  5. Sopen01g022180

Sopen01g022180


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g022180

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G181158 No alias chromatin remodeling 4 0.02 Orthogroups_2024-Update
LOC_Os02g17292 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g24050 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Solyc01g016710 No alias No description available 0.03 Orthogroups_2024-Update
Sopen04g030350 No alias Rhamnogalacturonate lyase family 0.03 Orthogroups_2024-Update
Sopen05g011340 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen06g006510 No alias Chromo (CHRromatin Organisation MOdifier) domain 0.03 Orthogroups_2024-Update
Sopen07g005780 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen11g009960 No alias Retrotransposon gag protein 0.04 Orthogroups_2024-Update
Sopen11g022600 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR005162 Retrotrans_gag_dom 182 247
IPR000477 RT_dom 576 735
No external refs found!