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  5. Sopen01g022200

Sopen01g022200


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g022200
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Kfl01382_0010 kfl01382_0010_v1.1 no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
LOC_Os08g30360 No alias retrotransposon protein, putative, Ty1-copia subclass 0.02 Orthogroups_2024-Update
Solyc02g005160 No alias No description available 0.03 Orthogroups_2024-Update
Sopen00g011290 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen02g015660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g029770 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g023540 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen11g014180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
evm.model.contig_2449.3 No alias (p10978|polx_tobac : 121.0) Retrovirus-related Pol... 0.01 Orthogroups_2024-Update
evm.model.contig_3644.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.contig_4533.1 No alias (p10978|polx_tobac : 122.0) Retrovirus-related Pol... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 393 455
IPR025724 GAG-pre-integrase_dom 162 222
No external refs found!