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  5. 410613

410613


Description : U5 small nuclear ribonucleoprotein helicase


Gene families : OG_42_0000868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000868_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 410613
Cluster HCCA clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
A4A49_03610 No alias dexh-box atp-dependent rna helicase dexh14 0.02 Orthogroups_2024-Update
Bradi1g70057 No alias U5 small nuclear ribonucleoprotein helicase 0.02 Orthogroups_2024-Update
Bradi3g48850 No alias ATP binding;ATP-dependent helicases;DNA helicases 0.02 Orthogroups_2024-Update
Glyma.15G253800 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.01 Orthogroups_2024-Update
Kfl00102_0100 kfl00102_0100_v1.1 (at1g20960 : 2806.0) embryo defective 1507 (emb1507);... 0.01 Orthogroups_2024-Update
Kfl00417_0080 kfl00417_0080_v1.1 (at5g61140 : 2262.0) Encodes a predicted protein with... 0.01 Orthogroups_2024-Update
MA_10434991g0010 No alias (at5g61140 : 361.0) Encodes a predicted protein with 30%... 0.03 Orthogroups_2024-Update
Mp1g06890.1 No alias RNA helicase (Brr2) 0.01 Orthogroups_2024-Update
PSME_00000757-RA No alias (at5g61140 : 756.0) Encodes a predicted protein with 30%... 0.02 Orthogroups_2024-Update
Pp1s28_172V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.1G005500.1 No alias RNA helicase *(Brr2) 0.02 Orthogroups_2024-Update
Solyc06g071620 No alias U5 small nuclear ribonucleoprotein helicase (AHRD V3.3... 0.01 Orthogroups_2024-Update
evm.model.contig_4469.3 No alias (at5g61140 : 1009.0) Encodes a predicted protein with... 0.03 Orthogroups_2024-Update
evm.model.contig_564.1 No alias (at1g20960 : 540.0) embryo defective 1507 (emb1507);... 0.02 Orthogroups_2024-Update
evm.model.tig00000865.27 No alias (at1g20960 : 291.0) embryo defective 1507 (emb1507);... 0.01 Orthogroups_2024-Update
evm.model.tig00000865.28 No alias (at1g20960 : 1091.0) embryo defective 1507 (emb1507);... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004363 glutathione synthase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004540 ribonuclease activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006749 glutathione metabolic process IEP Predicted GO
BP GO:0006750 glutathione biosynthetic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
BP GO:0019184 nonribosomal peptide biosynthetic process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
BP GO:0051188 cofactor biosynthetic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR004179 Sec63-dom 1746 1810
IPR004179 Sec63-dom 775 1080
IPR001650 Helicase_C 1391 1487
IPR001650 Helicase_C 561 651
IPR004179 Sec63-dom 1608 1745
IPR011545 DEAD/DEAH_box_helicase_dom 1124 1289
IPR011545 DEAD/DEAH_box_helicase_dom 298 449
No external refs found!