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  5. Sopen01g023160

Sopen01g023160


Description : S1 RNA binding domain


Gene families : OG_42_0004607 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004607_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g023160
Cluster HCCA clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Bradi1g64130 No alias ribosomal protein S1 0.05 Orthogroups_2024-Update
Brara.F02917.1 No alias component *(bS1c) of small plastid ribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Brara.I00435.1 No alias component *(bS1c) of small plastid ribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Cre09.g394750 No alias ribosomal protein S1 0.05 Orthogroups_2024-Update
GRMZM5G862107 No alias ribosomal protein S1 0.05 Orthogroups_2024-Update
Glyma.17G037700 No alias ribosomal protein S1 0.03 Orthogroups_2024-Update
MA_694512g0010 No alias (p29344|rr1_spiol : 262.0) 30S ribosomal protein S1,... 0.03 Orthogroups_2024-Update
Potri.008G101100 No alias ribosomal protein S1 0.05 Orthogroups_2024-Update
Potri.010G150300 No alias ribosomal protein S1 0.03 Orthogroups_2024-Update
Pp1s32_313V6 No alias 30s ribosomal protein s1 0.04 Orthogroups_2024-Update
Pp1s40_14V6 No alias 30s ribosomal protein s1 0.04 Orthogroups_2024-Update
Seita.9G425000.1 No alias component *(bS1c) of small plastid ribosomal-subunit proteome 0.1 Orthogroups_2024-Update
Sobic.001G391400.1 No alias component *(bS1c) of small plastid ribosomal-subunit proteome 0.07 Orthogroups_2024-Update
Solyc01g057830 No alias 30S ribosomal protein S1 (AHRD V3.3 *** W9RV42_9ROSA) 0.06 Orthogroups_2024-Update
evm.model.tig00000241.13 No alias (p29344|rr1_spiol : 291.0) 30S ribosomal protein S1,... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003029 S1_domain 184 247
IPR003029 S1_domain 95 167
IPR003029 S1_domain 260 330
No external refs found!