Sopen01g025180


Description : Phytochrome region


Gene families : OG_42_0001032 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001032_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g025180
Cluster HCCA clusters: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
A4A49_20603 No alias phytochrome e 0.03 Orthogroups_2024-Update
A4A49_26492 No alias phytochrome b 0.03 Orthogroups_2024-Update
A4A49_55972 No alias phytochrome e 0.05 Orthogroups_2024-Update
At1g09570 No alias phytochrome A [Source:TAIR;Acc:AT1G09570] 0.02 Orthogroups_2024-Update
Bradi1g08400 No alias phytochrome C 0.02 Orthogroups_2024-Update
Brara.A00929.1 No alias phytochrome photoreceptor *(PHY) 0.03 Orthogroups_2024-Update
GRMZM2G092174 No alias phytochrome B 0.02 Orthogroups_2024-Update
Glyma.15G140000 No alias phytochrome B 0.02 Orthogroups_2024-Update
Glyma.20G090000 No alias phytochrome A 0.03 Orthogroups_2024-Update
Mp2g16090.1 No alias phytochrome photoreceptor (PHY). temperature sensor... 0.02 Orthogroups_2024-Update
Pp1s233_24V6 No alias phy1 gene for phytochrome protein PHY1 0.02 Orthogroups_2024-Update
Pp1s327_27V6 No alias phy2 gene for phytochrome protein PHY2 0.02 Orthogroups_2024-Update
Pp1s47_31V6 No alias phytochrome b 0.02 Orthogroups_2024-Update
Pp1s91_116V6 No alias phytochrome p 0.02 Orthogroups_2024-Update
Seita.9G113600.1 No alias phytochrome photoreceptor *(PHY) 0.03 Orthogroups_2024-Update
Solyc01g059870 No alias phytochrome B1 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
BP GO:0007165 signal transduction IEA InterProScan predictions
BP GO:0009584 detection of visible light IEA InterProScan predictions
BP GO:0018298 protein-chromophore linkage IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013515 Phytochrome_cen-reg 421 596
IPR003594 HATPase_C 1009 1120
IPR003661 HisK_dim/P 900 961
IPR003018 GAF 229 408
IPR013654 PAS_2 80 196
IPR013767 PAS_fold 625 740
IPR013767 PAS_fold 756 875
No external refs found!