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  5. Sopen01g025970

Sopen01g025970


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g025970
Cluster HCCA clusters: Cluster_275

Target Alias Description ECC score Gene Family Method Actions
A4A49_24733 No alias phosphoglucomutase, cytoplasmic 0.05 Orthogroups_2024-Update
Cre03.g183950 No alias cysteine-rich RLK (RECEPTOR-like protein kinase) 8 0.02 Orthogroups_2024-Update
Kfl01263_0030 kfl01263_0030_v1.1 (original description: no original description) 0.03 Orthogroups_2024-Update
LOC_Os02g49930 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g01440 No alias retrotransposon protein, putative, Ty1-copia subclass 0.03 Orthogroups_2024-Update
Solyc04g011970 No alias No description available 0.02 Orthogroups_2024-Update
Solyc06g060030 No alias No description available 0.04 Orthogroups_2024-Update
Solyc08g061870 No alias No description available 0.02 Orthogroups_2024-Update
Sopen01g003530 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
Sopen01g005210 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g020160 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen01g027290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen01g027300 No alias Integrase core domain 0.04 Orthogroups_2024-Update
Sopen02g009570 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen06g008980 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen07g022690 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g006260 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen09g017310 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen09g024800 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.05 Orthogroups_2024-Update
Sopen09g027810 No alias gag-polypeptide of LTR copia-type 0.04 Orthogroups_2024-Update
Sopen10g007390 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g017070 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen10g022510 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g014800 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g022040 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen12g024140 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen12g027810 No alias Integrase core domain 0.04 Orthogroups_2024-Update
Sopen12g027910 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 245 489
No external refs found!