Sopen01g026300

Description : hAT family C-terminal dimerisation region

Gene families : OG_42_0000225 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000225_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g026300
Cluster	HCCA clusters: Cluster_413

Target	Alias	Description	ECC score	Gene Family Method
Brara.K01253.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Glyma.05G009300	No alias	BED zinc finger ;hAT family dimerisation domain	0.03	Orthogroups_2024-Update
LOC_Os04g46690	No alias	transposon protein, putative, unclassified, expressed	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR008906	HATC_C_dom	585	667
IPR025525	hAT-like_transposase_RNase-H	428	530
IPR003656	Znf_BED	702	748
IPR003656	Znf_BED	40	85

External Links

No external refs found!