Description : SRF-type transcription factor (DNA-binding and dimerisation domain)
Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Solanum release: Sopen01g026520 | |
Cluster | HCCA clusters: Cluster_4 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At2g22630 | No alias | AGL17 [Source:UniProtKB/TrEMBL;Acc:A0A178W215] | 0.03 | Orthogroups_2024-Update | |
At5g60440 | No alias | Agamous-like MADS-box protein AGL62... | 0.02 | Orthogroups_2024-Update | |
Glyma.17G081200 | No alias | AGAMOUS-like 8 | 0.05 | Orthogroups_2024-Update | |
Glyma.20G136700 | No alias | AGAMOUS-like 62 | 0.03 | Orthogroups_2024-Update | |
LOC_Os01g10504 | No alias | OsMADS3 - MADS-box family gene with MIKCc type-box, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os02g06860 | No alias | OsMADS80 - MADS-box family gene with M-alpha type-box, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os02g45770 | No alias | OsMADS6 - MADS-box family gene with MIKCc type-box, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os04g38780 | No alias | transcription factor, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os08g38590 | No alias | OsMADS62 - MADS-box family gene with MIKC* type-box, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os09g02780 | No alias | OsMADS77 - MADS-box family gene with M-alpha type-box, expressed | 0.03 | Orthogroups_2024-Update | |
Sopen01g048550 | No alias | SRF-type transcription factor (DNA-binding and... | 0.03 | Orthogroups_2024-Update | |
Sopen02g034000 | No alias | K-box region | 0.04 | Orthogroups_2024-Update | |
Sopen06g023350 | No alias | K-box region | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | InterProScan predictions |
MF | GO:0046983 | protein dimerization activity | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002100 | TF_MADSbox | 14 | 59 |
No external refs found! |