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  5. Sopen01g026520

Sopen01g026520


Description : SRF-type transcription factor (DNA-binding and dimerisation domain)


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g026520
Cluster HCCA clusters: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
At2g22630 No alias AGL17 [Source:UniProtKB/TrEMBL;Acc:A0A178W215] 0.03 Orthogroups_2024-Update
At5g60440 No alias Agamous-like MADS-box protein AGL62... 0.02 Orthogroups_2024-Update
Glyma.17G081200 No alias AGAMOUS-like 8 0.05 Orthogroups_2024-Update
Glyma.20G136700 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
LOC_Os01g10504 No alias OsMADS3 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g06860 No alias OsMADS80 - MADS-box family gene with M-alpha type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g45770 No alias OsMADS6 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g38780 No alias transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g38590 No alias OsMADS62 - MADS-box family gene with MIKC* type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g02780 No alias OsMADS77 - MADS-box family gene with M-alpha type-box, expressed 0.03 Orthogroups_2024-Update
Sopen01g048550 No alias SRF-type transcription factor (DNA-binding and... 0.03 Orthogroups_2024-Update
Sopen02g034000 No alias K-box region 0.04 Orthogroups_2024-Update
Sopen06g023350 No alias K-box region 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 14 59
No external refs found!