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  5. Sopen01g027290

Sopen01g027290


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000008 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g027290
Cluster HCCA clusters: Cluster_64

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g37610 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g41690 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
LOC_Os07g29490 No alias retrotransposon protein, putative, unclassified 0.02 Orthogroups_2024-Update
LOC_Os10g40800 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
Solyc01g067050 No alias No description available 0.03 Orthogroups_2024-Update
Solyc01g080060 No alias No description available 0.03 Orthogroups_2024-Update
Solyc02g005160 No alias No description available 0.04 Orthogroups_2024-Update
Solyc03g043680 No alias No description available 0.03 Orthogroups_2024-Update
Solyc05g050260 No alias No description available 0.04 Orthogroups_2024-Update
Solyc06g011300 No alias No description available 0.03 Orthogroups_2024-Update
Solyc06g011310 No alias No description available 0.03 Orthogroups_2024-Update
Solyc07g009400 No alias No description available 0.03 Orthogroups_2024-Update
Solyc08g061870 No alias No description available 0.03 Orthogroups_2024-Update
Solyc10g049460 No alias No description available 0.03 Orthogroups_2024-Update
Solyc10g054830 No alias No description available 0.03 Orthogroups_2024-Update
Sopen01g003530 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen01g005210 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g012650 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g020160 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen01g025970 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen04g006060 No alias gag-polypeptide of LTR copia-type 0.03 Orthogroups_2024-Update
Sopen04g013740 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen04g023600 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g008430 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen05g009410 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g019080 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g024300 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen05g033640 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen07g016720 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen11g014180 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
evm.model.contig_3718.1 No alias (p10978|polx_tobac : 570.0) Retrovirus-related Pol... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013103 RVT_2 280 473
No external refs found!