Sopen01g028410

Description : Reverse transcriptase (RNA-dependent DNA polymerase)

Gene families : OG_42_0000093 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000093_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g028410
Cluster	HCCA clusters: Cluster_153

Target	Alias	Description	ECC score	Gene Family Method
HORVU5Hr1G031070.9	No alias	Unknown function	0.02	Orthogroups_2024-Update
HORVU6Hr1G079150.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Kfl00170_0170	kfl00170_0170_v1.1	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
LOC_Os07g47620	No alias	universal stress protein domain containing protein,...	0.02	Orthogroups_2024-Update
Seita.3G339400.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sobic.008G124400.1	No alias	Unknown function	0.02	Orthogroups_2024-Update
Sopen04g006740	No alias	Universal stress protein family	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	InterProScan predictions
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR006016	UspA	803	950
IPR001584	Integrase_cat-core	181	246
IPR013103	RVT_2	452	562

External Links

No external refs found!