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  5. Sopen01g029620

Sopen01g029620


Description : Tub family


Gene families : OG_42_0000271 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000271_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g029620
Cluster HCCA clusters: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
At5g18680 No alias Uncharacterized protein At5g18680 (Fragment)... 0.05 Orthogroups_2024-Update
Bradi1g18380 No alias tubby like protein 3 0.02 Orthogroups_2024-Update
Bradi2g24110 No alias tubby like protein 10 0.02 Orthogroups_2024-Update
Bradi3g13080 No alias tubby like protein 10 0.03 Orthogroups_2024-Update
Brara.G00889.1 No alias TUB-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.15G098200 No alias tubby like protein 3 0.03 Orthogroups_2024-Update
Glyma.17G022700 No alias tubby like protein 3 0.06 Orthogroups_2024-Update
HORVU2Hr1G124880.1 No alias TUB-type transcription factor 0.06 Orthogroups_2024-Update
LOC_Os04g59130 No alias OsFBT6 - F-box and tubby domain containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os05g43850 No alias OsFBT9 - F-box and tubby domain containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.008G195200 No alias tubby like protein 3 0.03 Orthogroups_2024-Update
Pp1s25_366V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.2G422900.1 No alias TUB-type transcription factor 0.04 Orthogroups_2024-Update
Seita.3G148500.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Seita.3G227800.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Seita.6G003300.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Seita.9G404200.1 No alias TUB-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.006G277200.1 No alias TUB-type transcription factor 0.03 Orthogroups_2024-Update
Sobic.008G047400.2 No alias TUB-type transcription factor 0.02 Orthogroups_2024-Update
Solyc01g067680 No alias Tubby-like F-box protein (AHRD V3.3 *** M1APZ0_SOLTU) 0.04 Orthogroups_2024-Update
evm.model.tig00020603.38 No alias (at2g47900 : 117.0) Member of TLP family; tubby like... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001810 F-box_dom 34 82
IPR000007 Tubby_C 98 383
No external refs found!