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  5. Sopen01g030790

Sopen01g030790


Description : Core histone H2A/H2B/H3/H4


Gene families : OG_42_0000090 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g030790
Cluster HCCA clusters: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
103546 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
438193 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
78992 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
A4A49_35192 No alias histone h3.3 0.03 Orthogroups_2024-Update
A4A49_56508 No alias histone h3.2 0.05 Orthogroups_2024-Update
A4A49_57080 No alias histone h3.2 0.05 Orthogroups_2024-Update
A4A49_61103 No alias histone h3.2 0.05 Orthogroups_2024-Update
At1g09200 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.03 Orthogroups_2024-Update
At5g10400 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.02 Orthogroups_2024-Update
At5g65360 No alias Histone H3 [Source:UniProtKB/TrEMBL;Acc:A0A178WG20] 0.03 Orthogroups_2024-Update
Brara.B00354.1 No alias histone *(H3) 0.05 Orthogroups_2024-Update
Brara.B03430.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Brara.C00416.1 No alias histone *(H3) 0.02 Orthogroups_2024-Update
Brara.D00649.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Brara.H02834.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Brara.I00815.1 No alias histone *(H3) 0.05 Orthogroups_2024-Update
Brara.I01745.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Brara.J02314.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Brara.J02315.1 No alias histone *(H3) 0.02 Orthogroups_2024-Update
Cre06.g264650 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g265250 No alias Histone superfamily protein 0.09 Orthogroups_2024-Update
Cre06.g267950 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre06.g268350 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre06.g274000 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g274850 No alias Histone superfamily protein 0.1 Orthogroups_2024-Update
Cre06.g276600 No alias Histone superfamily protein 0.08 Orthogroups_2024-Update
Cre06.g276850 No alias Histone superfamily protein 0.08 Orthogroups_2024-Update
Cre12.g504650 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre12.g504800 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Cre12.g505500 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre12.g506300 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Cre12.g506500 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Cre16.g661450 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre17.g708150 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Cre17.g708700 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre17.g709050 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G078314 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G130079 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G171387 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G176358 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G179005 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G418258 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.05G188600 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.05G188700 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.07G202500 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.08G227400 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.11G130900 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.13G173100 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.13G342000 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G032300 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.15G222200 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.17G255602 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G266200 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
HORVU1Hr1G058490.4 No alias histone *(H3) 0.03 Orthogroups_2024-Update
HORVU4Hr1G073150.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
HORVU7Hr1G012820.2 No alias histone *(H3) 0.02 Orthogroups_2024-Update
HORVU7Hr1G033030.1 No alias histone *(H3) 0.02 Orthogroups_2024-Update
HORVU7Hr1G034470.1 No alias histone *(H3) 0.08 Orthogroups_2024-Update
HORVU7Hr1G100450.1 No alias histone *(H3) 0.05 Orthogroups_2024-Update
Kfl00053_0050 kfl00053_0050_v1.1 (p08437|h3_volca : 147.0) Histone H3 - Volvox carteri &... 0.02 Orthogroups_2024-Update
Kfl00240_g18 kfl00240_g18_v1.1 (at5g10980 : 254.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
MA_24261g0010 No alias (at5g10980 : 255.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
MA_56411g0010 No alias (at5g65360 : 262.0) Histone superfamily protein;... 0.07 Orthogroups_2024-Update
MA_74555g0010 No alias (at5g65360 : 127.0) Histone superfamily protein;... 0.05 Orthogroups_2024-Update
Mp3g07730.1 No alias histone (H3) 0.02 Orthogroups_2024-Update
Mp3g09090.1 No alias histone (H3) 0.02 Orthogroups_2024-Update
Mp7g10730.1 No alias histone (H3) 0.03 Orthogroups_2024-Update
Mp7g16200.1 No alias histone (H3) 0.02 Orthogroups_2024-Update
Mp7g18030.1 No alias histone (H3) 0.02 Orthogroups_2024-Update
PSME_00020262-RA No alias (at5g65360 : 228.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00024557-RA No alias (at5g10980 : 215.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
Seita.3G227400.1 No alias histone *(H3) 0.06 Orthogroups_2024-Update
Seita.4G020800.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Seita.4G066000.1 No alias histone *(H3) 0.11 Orthogroups_2024-Update
Sobic.006G076400.1 No alias histone *(H3) 0.03 Orthogroups_2024-Update
Sobic.006G081800.1 No alias histone *(H3) 0.05 Orthogroups_2024-Update
Solyc01g074000 No alias Histone H3 (AHRD V3.3 *** A0A0E0P928_ORYRU) 0.12 Orthogroups_2024-Update
Solyc01g079110 No alias Histone H3 (AHRD V3.3 *** A0A0V0H170_SOLCH) 0.14 Orthogroups_2024-Update
Solyc01g080600 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.13 Orthogroups_2024-Update
Solyc01g086820 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.11 Orthogroups_2024-Update
Solyc02g077480 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.05 Orthogroups_2024-Update
Solyc04g074580 No alias Histone H3 (AHRD V3.3 *** K7VSQ3_MAIZE) 0.07 Orthogroups_2024-Update
Solyc05g051500 No alias WEB family protein, chloroplastic (AHRD V3.3 *-*... 0.02 Orthogroups_2024-Update
Solyc10g008910 No alias Histone H3 (AHRD V3.3 *** A0A068VC55_COFCA) 0.05 Orthogroups_2024-Update
Solyc12g056540 No alias Histone H3 (AHRD V3.3 *** K4DFY5_SOLLC) 0.06 Orthogroups_2024-Update
Sopen02g022390 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
evm.model.contig_2255.2 No alias (at5g10980 : 218.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!