1. Home
  2. Species
  3. Selaginella moellendorffii
  4. Sequence
  5. 52965

52965


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0007682 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007682_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 52965
Cluster HCCA clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
PSME_00054913-RA No alias (at3g42630 : 343.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
Sobic.007G203100.1 No alias splicing factor *(PBF2) 0.03 Orthogroups_2024-Update
Sopen05g027850 No alias PPR repeat 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004640 phosphoribosylanthranilate isomerase activity IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 208 233
IPR002885 Pentatricopeptide_repeat 31 58
IPR002885 Pentatricopeptide_repeat 133 180
No external refs found!