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  5. Sopen01g031100

Sopen01g031100


Description : PPR repeat


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g031100
Cluster HCCA clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
412643 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
420699 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
420704 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
421992 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
428276 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
55637 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
At1g02370 No alias Pentatricopeptide repeat-containing protein At1g02370,... 0.04 Orthogroups_2024-Update
At1g80270 No alias PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6] 0.02 Orthogroups_2024-Update
At2g20710 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.04 Orthogroups_2024-Update
At4g01990 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.02 Orthogroups_2024-Update
Bradi1g49750 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g10850 No alias PENTATRICOPEPTIDE REPEAT 596 0.04 Orthogroups_2024-Update
Brara.F01064.1 No alias RNA editing factor *(POCO) 0.02 Orthogroups_2024-Update
Brara.G02029.1 No alias RNA editing factor *(POCO) 0.04 Orthogroups_2024-Update
GRMZM2G135940 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G000600 No alias PENTATRICOPEPTIDE REPEAT 596 0.04 Orthogroups_2024-Update
Glyma.03G108100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G127100 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
Glyma.19G129900 No alias PENTATRICOPEPTIDE REPEAT 596 0.03 Orthogroups_2024-Update
LOC_Os04g46010 No alias PPR repeat domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_29806g0010 No alias (at1g60770 : 282.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Potri.003G193600 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
Potri.011G120900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.2G083900.1 No alias RNA editing factor *(POCO) 0.03 Orthogroups_2024-Update
Sobic.003G144000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g079320 No alias Pentatricopeptide repeat-containing protein, putative... 0.07 Orthogroups_2024-Update
Solyc06g005140 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc11g006380 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 203 231
IPR002885 Pentatricopeptide_repeat 169 197
IPR002885 Pentatricopeptide_repeat 240 266
IPR002885 Pentatricopeptide_repeat 133 160
No external refs found!