Description : Ribosomal protein S5 family protein
Gene families : OG_42_0002117 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002117_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Selaginella: 67484 | |
Cluster | HCCA clusters: Cluster_23 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
A4A49_17312 | No alias | 40s ribosomal protein s2-4 | 0.1 | Orthogroups_2024-Update | |
AC210013.4_FG019 | No alias | Ribosomal protein S5 family protein | 0.12 | Orthogroups_2024-Update | |
At1g58380 | No alias | At1g59359 [Source:UniProtKB/TrEMBL;Acc:G1JSI6] | 0.03 | Orthogroups_2024-Update | |
At3g57490 | No alias | 40S ribosomal protein S2-4... | 0.05 | Orthogroups_2024-Update | |
Bradi1g04660 | No alias | Ribosomal protein S5 family protein | 0.09 | Orthogroups_2024-Update | |
Bradi1g54270 | No alias | Ribosomal protein S5 family protein | 0.07 | Orthogroups_2024-Update | |
Brara.A02366.1 | No alias | component *(uS5) of small ribosomal-subunit (SSU) proteome | 0.14 | Orthogroups_2024-Update | |
Brara.C02137.1 | No alias | component *(uS5) of small ribosomal-subunit (SSU) proteome | 0.17 | Orthogroups_2024-Update | |
Brara.E00249.1 | No alias | component *(uS5) of small ribosomal-subunit (SSU) proteome | 0.19 | Orthogroups_2024-Update | |
Cre01.g039250 | No alias | Ribosomal protein S5 family protein | 0.05 | Orthogroups_2024-Update | |
GRMZM2G092663 | No alias | Ribosomal protein S5 family protein | 0.04 | Orthogroups_2024-Update | |
Glyma.02G085300 | No alias | Ribosomal protein S5 family protein | 0.12 | Orthogroups_2024-Update | |
Glyma.05G239000 | No alias | Ribosomal protein S5 family protein | 0.11 | Orthogroups_2024-Update | |
HORVU3Hr1G086050.2 | No alias | component *(uS5) of small ribosomal-subunit (SSU) proteome | 0.13 | Orthogroups_2024-Update | |
HORVU5Hr1G109910.2 | No alias | component *(uS5) of small ribosomal-subunit (SSU) proteome | 0.13 | Orthogroups_2024-Update | |
LOC_Os03g59310 | No alias | ribosomal protein, putative, expressed | 0.04 | Orthogroups_2024-Update | |
Mp5g04380.1 | No alias | component RPS2 of SSU proteome | 0.03 | Orthogroups_2024-Update | |
Mp5g05010.1 | No alias | component RPS2 of SSU proteome | 0.14 | Orthogroups_2024-Update | |
Mp5g15970.1 | No alias | component RPS2 of SSU proteome | 0.17 | Orthogroups_2024-Update | |
PSME_00012533-RA | No alias | (at3g57490 : 398.0) Ribosomal protein S5 family protein;... | 0.05 | Orthogroups_2024-Update | |
PSME_00031543-RA | No alias | (at3g57490 : 396.0) Ribosomal protein S5 family protein;... | 0.05 | Orthogroups_2024-Update | |
Potri.006G052400 | No alias | Ribosomal protein S5 family protein | 0.07 | Orthogroups_2024-Update | |
Potri.016G055000 | No alias | Ribosomal protein S5 family protein | 0.05 | Orthogroups_2024-Update | |
Pp1s10_190V6 | No alias | 40s ribosomal protein | 0.14 | Orthogroups_2024-Update | |
Pp1s274_5V6 | No alias | 40s ribosomal protein | 0.15 | Orthogroups_2024-Update | |
Pp1s400_15V6 | No alias | 40s ribosomal protein | 0.17 | Orthogroups_2024-Update | |
Seita.2G079700.1 | No alias | component *(uS5) of small ribosomal-subunit (SSU) proteome | 0.19 | Orthogroups_2024-Update | |
Seita.9G044700.1 | No alias | component *(uS5) of small ribosomal-subunit (SSU) proteome | 0.14 | Orthogroups_2024-Update | |
Sobic.001G046100.1 | No alias | component *(uS5) of small ribosomal-subunit (SSU) proteome | 0.18 | Orthogroups_2024-Update | |
Sobic.001G046300.1 | No alias | component *(uS5) of small ribosomal-subunit (SSU) proteome | 0.24 | Orthogroups_2024-Update | |
Solyc04g063290 | No alias | 40S ribosomal protein S2 (AHRD V3.3 *** K7WJZ4_SOLTU) | 0.19 | Orthogroups_2024-Update | |
Solyc04g074300 | No alias | 40S ribosomal protein S2 (AHRD V3.3 *** K7WJZ4_SOLTU) | 0.2 | Orthogroups_2024-Update | |
Sopen04g026210 | No alias | Ribosomal protein S5, N-terminal domain | 0.21 | Orthogroups_2024-Update | |
Sopen04g029430 | No alias | Ribosomal protein S5, N-terminal domain | 0.11 | Orthogroups_2024-Update | |
evm.model.contig_4442.1 | No alias | (at1g58684 : 326.0) Ribosomal protein S5 family protein;... | 0.25 | Orthogroups_2024-Update | |
evm.model.tig00020961.135 | No alias | (at3g57490 : 348.0) Ribosomal protein S5 family protein;... | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | InterProScan predictions |
MF | GO:0003735 | structural constituent of ribosome | IEA | InterProScan predictions |
CC | GO:0005840 | ribosome | IEA | InterProScan predictions |
BP | GO:0006412 | translation | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000774 | adenyl-nucleotide exchange factor activity | IEP | Predicted GO |
MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
MF | GO:0004743 | pyruvate kinase activity | IEP | Predicted GO |
MF | GO:0004827 | proline-tRNA ligase activity | IEP | Predicted GO |
CC | GO:0005622 | intracellular | IEP | Predicted GO |
CC | GO:0005741 | mitochondrial outer membrane | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006364 | rRNA processing | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006414 | translational elongation | IEP | Predicted GO |
BP | GO:0006433 | prolyl-tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0006457 | protein folding | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
BP | GO:0016072 | rRNA metabolic process | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
CC | GO:0019867 | outer membrane | IEP | Predicted GO |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
MF | GO:0030955 | potassium ion binding | IEP | Predicted GO |
CC | GO:0031090 | organelle membrane | IEP | Predicted GO |
MF | GO:0031420 | alkali metal ion binding | IEP | Predicted GO |
CC | GO:0031966 | mitochondrial membrane | IEP | Predicted GO |
CC | GO:0031968 | organelle outer membrane | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
MF | GO:0042802 | identical protein binding | IEP | Predicted GO |
MF | GO:0042803 | protein homodimerization activity | IEP | Predicted GO |
BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
CC | GO:0044422 | organelle part | IEP | Predicted GO |
CC | GO:0044429 | mitochondrial part | IEP | Predicted GO |
CC | GO:0044446 | intracellular organelle part | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
MF | GO:0051087 | chaperone binding | IEP | Predicted GO |
MF | GO:0060590 | ATPase regulator activity | IEP | Predicted GO |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
CC | GO:0098588 | bounding membrane of organelle | IEP | Predicted GO |
CC | GO:0098805 | whole membrane | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
No external refs found! |