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  5. Sopen01g031970

Sopen01g031970


Description : PPR repeat family


Gene families : OG_42_0010026 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0010026_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g031970
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
Bradi2g13310 No alias mitochondrial editing factor 18 0.02 Orthogroups_2024-Update
GRMZM2G033884 No alias mitochondrial editing factor 18 0.04 Orthogroups_2024-Update
Potri.010G029900 No alias mitochondrial editing factor 18 0.08 Orthogroups_2024-Update
Seita.9G530700.1 No alias RNA editing factor *(MEF18) 0.06 Orthogroups_2024-Update
Sobic.002G251800.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g080190 No alias Pentatricopeptide repeat-containing protein, putative... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 494 518
IPR002885 Pentatricopeptide_repeat 96 117
IPR002885 Pentatricopeptide_repeat 588 619
IPR002885 Pentatricopeptide_repeat 255 281
IPR002885 Pentatricopeptide_repeat 418 457
IPR002885 Pentatricopeptide_repeat 521 569
IPR002885 Pentatricopeptide_repeat 154 200
IPR002885 Pentatricopeptide_repeat 285 322
No external refs found!