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  4. Sequence
  5. 76175

76175


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 76175
Cluster HCCA clusters: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
At3g01580 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
At4g14820 No alias Pentatricopeptide repeat-containing protein At4g14820... 0.07 Orthogroups_2024-Update
At4g15720 No alias Pentatricopeptide repeat-containing protein At4g15720... 0.05 Orthogroups_2024-Update
Brara.A00314.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.C03980.1 No alias RNA editing factor *(MEF25) 0.04 Orthogroups_2024-Update
Brara.E03381.1 No alias RNA editing factor *(MEF19) 0.06 Orthogroups_2024-Update
HORVU6Hr1G091320.4 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g60250 No alias pentatricopeptide, putative, expressed 0.01 Orthogroups_2024-Update
PSME_00004102-RA No alias (at4g02750 : 508.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00056606-RA No alias (at3g03580 : 586.0) Tetratricopeptide repeat (TPR)-like... 0.07 Orthogroups_2024-Update
PSME_00057163-RA No alias (at1g11290 : 707.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
Potri.005G215500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.006G211400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.010G161800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.014G191200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
Pp1s178_15V6 No alias T1B8.1; pentatricopeptide (PPR) repeat-containing... 0.04 Orthogroups_2024-Update
Seita.7G139500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G282300.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.002G084400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G119100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G181000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g007850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.02 Orthogroups_2024-Update
Solyc01g010510 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.01 Orthogroups_2024-Update
Solyc10g008590 No alias Pentatricopeptide repeat-containing protein, putative... 0.02 Orthogroups_2024-Update
Sopen00g008750 No alias PPR repeat 0.01 Orthogroups_2024-Update
Sopen07g001950 No alias PPR repeat 0.01 Orthogroups_2024-Update
Sopen09g035030 No alias PPR repeat family 0.01 Orthogroups_2024-Update
Sopen11g001910 No alias PPR repeat family 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 602 631
IPR002885 Pentatricopeptide_repeat 269 296
IPR002885 Pentatricopeptide_repeat 573 597
IPR002885 Pentatricopeptide_repeat 168 191
IPR002885 Pentatricopeptide_repeat 370 392
IPR002885 Pentatricopeptide_repeat 957 983
IPR002885 Pentatricopeptide_repeat 403 431
IPR002885 Pentatricopeptide_repeat 297 327
IPR002885 Pentatricopeptide_repeat 60 83
IPR002885 Pentatricopeptide_repeat 472 498
IPR002885 Pentatricopeptide_repeat 778 805
IPR002885 Pentatricopeptide_repeat 501 530
IPR002885 Pentatricopeptide_repeat 827 885
IPR002885 Pentatricopeptide_repeat 86 133
IPR002885 Pentatricopeptide_repeat 194 241
IPR032867 DYW_dom 987 1111
No external refs found!