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  5. 77426

77426


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 77426
Cluster HCCA clusters: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
111891 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
132724 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
16621 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
96927 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G026070.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G026110.4 No alias RNA editing factor *(DOT4) 0.02 Orthogroups_2024-Update
HORVU6Hr1G091320.4 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.1G311600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.6G213800.1 No alias RNA editing factor *(DOT4) 0.02 Orthogroups_2024-Update
Seita.7G131800.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004298 threonine-type endopeptidase activity IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
MF GO:0070003 threonine-type peptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 456 481
IPR002885 Pentatricopeptide_repeat 558 581
IPR002885 Pentatricopeptide_repeat 152 177
IPR002885 Pentatricopeptide_repeat 251 272
IPR002885 Pentatricopeptide_repeat 276 327
IPR002885 Pentatricopeptide_repeat 380 427
IPR002885 Pentatricopeptide_repeat 178 223
IPR002885 Pentatricopeptide_repeat 483 529
IPR002885 Pentatricopeptide_repeat 77 124
No external refs found!