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  5. Solyc01g107870

Solyc01g107870


Description : Polyadenylate-binding protein (AHRD V3.3 *** K4B303_SOLLC)


Gene families : OG_42_0000711 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000711_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g107870
Cluster HCCA clusters: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
evm.model.tig00021244.19 No alias (at4g34110 : 249.0) Putative poly-A binding protein.... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004418 hydroxymethylbilane synthase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002004 PABP_HYD 551 617
IPR000504 RRM_dom 23 93
IPR000504 RRM_dom 111 179
IPR000504 RRM_dom 305 373
IPR000504 RRM_dom 202 270
No external refs found!