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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Selaginella: 79052 | |
| Cluster | HCCA clusters: Cluster_123 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_30034 | No alias | pentatricopeptide repeat-containing protein, chloroplastic | 0.02 | Orthogroups_2024-Update | |
| At1g59720 | No alias | Pentatricopeptide repeat-containing protein At1g59720,... | 0.02 | Orthogroups_2024-Update | |
| At5g06540 | No alias | Pentatricopeptide repeat-containing protein At5g06540... | 0.03 | Orthogroups_2024-Update | |
| Brara.A01120.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Brara.I04699.1 | No alias | RNA editing factor *(MEF21) | 0.02 | Orthogroups_2024-Update | |
| Glyma.09G236700 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.12G102800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| HORVU6Hr1G027560.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| MA_211508g0010 | No alias | (at4g18750 : 505.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
| MA_921g0010 | No alias | (at3g12770 : 484.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
| PSME_00039458-RA | No alias | (at4g13650 : 677.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
| Potri.002G155100 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.004G124400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.004G208000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.013G058900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Potri.014G097000 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
| Seita.1G076000.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.2G001800.1 | No alias | RNA editing factor *(ELI1) | 0.02 | Orthogroups_2024-Update | |
| Seita.2G091900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Seita.2G203900.1 | No alias | RNA editing factor *(OTP87) | 0.03 | Orthogroups_2024-Update | |
| Seita.3G075900.1 | No alias | RNA editing factor *(ECD1) | 0.02 | Orthogroups_2024-Update | |
| Seita.5G176900.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.7G131800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.9G151300.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.001G025800.1 | No alias | RNA editing factor *(CRR22) | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G223000.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.006G122100.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.006G275900.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.009G079400.1 | No alias | RNA editing factor *(ECD1) | 0.02 | Orthogroups_2024-Update | |
| Solyc01g007850 | No alias | Pentatricopeptide repeat superfamily protein, putative... | 0.03 | Orthogroups_2024-Update | |
| Sopen00g008750 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
| Sopen06g024560 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
| Sopen07g001950 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| MF | GO:0004814 | arginine-tRNA ligase activity | IEP | Predicted GO |
| CC | GO:0005737 | cytoplasm | IEP | Predicted GO |
| CC | GO:0005777 | peroxisome | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| BP | GO:0006420 | arginyl-tRNA aminoacylation | IEP | Predicted GO |
| BP | GO:0007031 | peroxisome organization | IEP | Predicted GO |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | Predicted GO |
| MF | GO:0010181 | FMN binding | IEP | Predicted GO |
| MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Predicted GO |
| MF | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | IEP | Predicted GO |
| CC | GO:0042579 | microbody | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032867 | DYW_dom | 519 | 641 |
| IPR002885 | Pentatricopeptide_repeat | 141 | 188 |
| IPR002885 | Pentatricopeptide_repeat | 345 | 391 |
| IPR002885 | Pentatricopeptide_repeat | 239 | 288 |
| IPR002885 | Pentatricopeptide_repeat | 115 | 140 |
| IPR002885 | Pentatricopeptide_repeat | 42 | 72 |
| IPR002885 | Pentatricopeptide_repeat | 13 | 41 |
| No external refs found! |