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  5. Sopen01g032810

Sopen01g032810


Description : PPR repeat


Gene families : OG_42_0014963 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0014963_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g032810
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Glyma.11G081400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
MA_452577g0010 No alias (at4g02750 : 499.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 126 152
IPR002885 Pentatricopeptide_repeat 250 278
IPR002885 Pentatricopeptide_repeat 512 535
IPR002885 Pentatricopeptide_repeat 412 437
IPR002885 Pentatricopeptide_repeat 190 217
IPR002885 Pentatricopeptide_repeat 157 183
IPR002885 Pentatricopeptide_repeat 95 125
IPR002885 Pentatricopeptide_repeat 282 309
IPR002885 Pentatricopeptide_repeat 220 248
IPR002885 Pentatricopeptide_repeat 312 340
IPR002885 Pentatricopeptide_repeat 61 94
IPR002885 Pentatricopeptide_repeat 438 485
No external refs found!