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  5. Sopen01g033110

Sopen01g033110


Description : PPR repeat


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g033110
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
107260 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
134463 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
415185 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
80739 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
97289 No alias pentatricopeptide (PPR) repeat-containing protein 0.02 Orthogroups_2024-Update
At2g29760 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.02 Orthogroups_2024-Update
At3g57430 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.03 Orthogroups_2024-Update
At5g59200 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
Bradi2g25480 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g20810 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G043900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G071600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Glyma.06G311600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.08G086500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G294900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G006200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G313200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.14G224400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.15G059000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G085900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os01g72930 No alias pentatricopeptide, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os05g49740 No alias EMB2744, putative, expressed 0.03 Orthogroups_2024-Update
MA_103698g0030 No alias (at3g13770 : 453.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_105629g0010 No alias (at3g49142 : 670.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_11454g0010 No alias (at4g13650 : 676.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_122899g0010 No alias (at3g57430 : 674.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
MA_13057g0010 No alias (at4g33170 : 800.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_16917g0010 No alias (at4g13650 : 578.0) Pentatricopeptide repeat (PPR)... 0.07 Orthogroups_2024-Update
MA_183738g0010 No alias (at3g12770 : 617.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
MA_210823g0010 No alias (at4g37170 : 594.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_28607g0010 No alias (at4g02750 : 763.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_291996g0010 No alias (at1g11290 : 549.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
MA_36643g0010 No alias (at3g03580 : 738.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_36655g0010 No alias (at4g39530 : 586.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_442926g0010 No alias (at4g13650 : 697.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_50118g0010 No alias (at3g03580 : 671.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_63139g0020 No alias (at4g13650 : 686.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
MA_6329g0010 No alias (at4g02750 : 542.0) Tetratricopeptide repeat (TPR)-like... 0.06 Orthogroups_2024-Update
MA_68707g0010 No alias (at3g24000 : 546.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
MA_71420g0010 No alias (at2g22070 : 548.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
MA_9258g0010 No alias (at4g13650 : 664.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
PSME_00001719-RA No alias (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00001942-RA No alias (at3g57430 : 689.0) Encodes a chloroplast RNA editing... 0.03 Orthogroups_2024-Update
PSME_00002641-RA No alias (at1g11290 : 548.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00003874-RA No alias (at4g33170 : 590.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00005244-RA No alias (at3g46790 : 286.0) Encodes a member of a PCMP (plant... 0.03 Orthogroups_2024-Update
PSME_00005903-RA No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00006107-RA No alias (at1g11290 : 668.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00006196-RA No alias (at1g11290 : 685.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00007759-RA No alias (at3g12770 : 656.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update
PSME_00011507-RA No alias (at2g27610 : 676.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00013106-RA No alias (at4g13650 : 681.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00014659-RA No alias (at1g11290 : 712.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00022065-RA No alias (at3g57430 : 642.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
PSME_00031833-RA No alias (at3g13770 : 501.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00031955-RA No alias (at1g11290 : 710.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
PSME_00033106-RA No alias (at1g11290 : 489.0) Pentatricopeptide Repeat Protein... 0.04 Orthogroups_2024-Update
PSME_00041541-RA No alias (at3g12770 : 598.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00044871-RA No alias (at2g39620 : 426.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00046347-RA No alias (at2g13600 : 438.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00049918-RA No alias (at4g18750 : 525.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
PSME_00056507-RA No alias (at1g16480 : 719.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00057058-RA No alias (at3g12770 : 592.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
PSME_00057163-RA No alias (at1g11290 : 707.0) Pentatricopeptide Repeat Protein... 0.02 Orthogroups_2024-Update
PSME_00057248-RA No alias (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
Potri.001G066100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.001G258500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G027800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G075200 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.002G239600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G031600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G164900 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G124400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G208000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Potri.004G237000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G005700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.007G146800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.015G047600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.016G053500 No alias mitochondrial RNAediting factor 1 0.02 Orthogroups_2024-Update
Potri.017G137200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.018G040100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.T137000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G076000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.1G191400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G091900.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.2G177900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.4G225800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G124400.1 No alias RNA editing factor *(OTP81) 0.05 Orthogroups_2024-Update
Seita.5G245900.1 No alias RNA editing factor *(MEF1) 0.03 Orthogroups_2024-Update
Seita.5G326600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.5G385400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.7G298200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G355700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G477500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G069300.2 No alias RNA editing factor *(DEK36) 0.02 Orthogroups_2024-Update
Sobic.001G149100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G212200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G282300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G347100.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G111700.6 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G292300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G358900.3 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update
Sobic.002G384800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G389200.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.02 Orthogroups_2024-Update
Sobic.003G047400.1 No alias RNA editing factor *(OTP81) 0.02 Orthogroups_2024-Update
Sobic.003G237100.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G025100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G053100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G217900.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G312000.1 No alias RNA editing factor *(CLB19) 0.04 Orthogroups_2024-Update
Sobic.005G020000.7 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G069100.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G146400.4 No alias RNA editing factor *(MEF12) 0.03 Orthogroups_2024-Update
Sobic.007G006800.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G137800.3 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G208400.1 No alias RNA editing factor *(REME1) 0.02 Orthogroups_2024-Update
Sobic.008G009000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G116400.4 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G136200.1 No alias RNA editing factor *(MEF32) 0.03 Orthogroups_2024-Update
Sobic.009G238700.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G197400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g006920 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.07 Orthogroups_2024-Update
Solyc01g020340 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc01g081290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc01g081560 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
Solyc01g090510 No alias Pentatricopeptide repeat-containing protein, putative... 0.06 Orthogroups_2024-Update
Solyc01g091610 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.04 Orthogroups_2024-Update
Solyc01g094850 No alias Pentatricopeptide repeat superfamily protein, putative... 0.06 Orthogroups_2024-Update
Solyc01g095160 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc01g097670 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc01g100800 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.04 Orthogroups_2024-Update
Solyc01g112200 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc02g065030 No alias No description available 0.03 Orthogroups_2024-Update
Solyc02g088650 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.06 Orthogroups_2024-Update
Solyc03g006990 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc03g007840 No alias Pentatricopeptide repeat-containing protein, putative... 0.06 Orthogroups_2024-Update
Solyc03g063690 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc03g093630 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc03g097850 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc04g051480 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc04g064750 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.06 Orthogroups_2024-Update
Solyc04g082870 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc05g006800 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc05g023900 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc06g084580 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.04 Orthogroups_2024-Update
Solyc07g042760 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc07g055310 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc09g009950 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.07 Orthogroups_2024-Update
Solyc09g010070 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc10g008590 No alias Pentatricopeptide repeat-containing protein, putative... 0.04 Orthogroups_2024-Update
Solyc10g080220 No alias Pentatricopeptide repeat superfamily protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc11g005960 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc11g006700 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc11g007230 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.05 Orthogroups_2024-Update
Solyc11g011860 No alias Pentatricopeptide repeat-containing protein family (AHRD... 0.06 Orthogroups_2024-Update
Solyc11g067210 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.05 Orthogroups_2024-Update
Solyc11g071370 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.06 Orthogroups_2024-Update
Solyc12g042400 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 530 558
IPR002885 Pentatricopeptide_repeat 126 155
IPR002885 Pentatricopeptide_repeat 95 123
IPR002885 Pentatricopeptide_repeat 632 661
IPR002885 Pentatricopeptide_repeat 227 255
IPR002885 Pentatricopeptide_repeat 502 527
IPR002885 Pentatricopeptide_repeat 429 454
IPR002885 Pentatricopeptide_repeat 300 325
IPR032867 DYW_dom 906 1027
IPR002885 Pentatricopeptide_repeat 734 778
IPR002885 Pentatricopeptide_repeat 326 372
No external refs found!