82212

Description : RNA helicase family protein

Gene families : OG_42_0000210 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000210_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Selaginella: 82212
Cluster	HCCA clusters: Cluster_178

Target	Alias	Description	ECC score	Gene Family Method
A4A49_00699	No alias	pre-mrna-splicing factor atp-dependent rna helicase deah7	0.02	Orthogroups_2024-Update
Bradi1g61220	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Bradi1g64190	No alias	RNA helicase family protein	0.02	Orthogroups_2024-Update
Glyma.06G201700	No alias	RNA helicase family protein	0.03	Orthogroups_2024-Update
Glyma.17G256200	No alias	ATP-dependent RNA helicase, putative	0.04	Orthogroups_2024-Update
Kfl00020_0480	kfl00020_0480_v1.1	(at3g26560 : 1414.0) ATP-dependent RNA helicase,...	0.02	Orthogroups_2024-Update
PSME_00005080-RA	No alias	(at5g13010 : 1519.0) embryo defective 3011 (EMB3011);...	0.02	Orthogroups_2024-Update
PSME_00016394-RA	No alias	(at3g26560 : 1512.0) ATP-dependent RNA helicase,...	0.02	Orthogroups_2024-Update
Pp1s331_36V6	No alias	deah (asp-glu-ala-his) box polypeptide 38	0.03	Orthogroups_2024-Update
evm.model.tig00021589.29	No alias	(at3g26560 : 868.0) ATP-dependent RNA helicase,...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	Predicted GO
MF	GO:0004725	protein tyrosine phosphatase activity	IEP	Predicted GO
BP	GO:0006470	protein dephosphorylation	IEP	Predicted GO
MF	GO:0008233	peptidase activity	IEP	Predicted GO
MF	GO:0008236	serine-type peptidase activity	IEP	Predicted GO
BP	GO:0016311	dephosphorylation	IEP	Predicted GO
MF	GO:0016791	phosphatase activity	IEP	Predicted GO
MF	GO:0017171	serine hydrolase activity	IEP	Predicted GO
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	601	727
IPR007502	Helicase-assoc_dom	790	866
IPR011709	DUF1605	938	1015
IPR011545	DEAD/DEAH_box_helicase_dom	402	556

External Links

No external refs found!