Description : mitochondrial editing factor 22
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Selaginella: 83339 | |
Cluster | HCCA clusters: Cluster_165 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
133644 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
GRMZM2G073460 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G096602 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G168378 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU1Hr1G052060.4 | No alias | RNA editing factor *(MEF25) | 0.03 | Orthogroups_2024-Update | |
HORVU6Hr1G027560.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
MA_10432670g0010 | No alias | (at3g02010 : 607.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_211508g0010 | No alias | (at4g18750 : 505.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_3471g0010 | No alias | (at4g13650 : 601.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_39595g0010 | No alias | (at1g08070 : 552.0) Encodes a chloroplast RNA editing... | 0.03 | Orthogroups_2024-Update | |
MA_66417g0010 | No alias | (at2g22070 : 634.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00031408-RA | No alias | (at4g30700 : 283.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00042426-RA | No alias | (at2g22070 : 552.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
Seita.9G375400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.9G489500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sopen12g032510 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003682 | chromatin binding | IEP | Predicted GO |
BP | GO:0006525 | arginine metabolic process | IEP | Predicted GO |
BP | GO:0006527 | arginine catabolic process | IEP | Predicted GO |
BP | GO:0006814 | sodium ion transport | IEP | Predicted GO |
MF | GO:0008792 | arginine decarboxylase activity | IEP | Predicted GO |
BP | GO:0009063 | cellular amino acid catabolic process | IEP | Predicted GO |
BP | GO:0009064 | glutamine family amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009065 | glutamine family amino acid catabolic process | IEP | Predicted GO |
BP | GO:0016054 | organic acid catabolic process | IEP | Predicted GO |
MF | GO:0016830 | carbon-carbon lyase activity | IEP | Predicted GO |
MF | GO:0016831 | carboxy-lyase activity | IEP | Predicted GO |
BP | GO:0030258 | lipid modification | IEP | Predicted GO |
BP | GO:0030259 | lipid glycosylation | IEP | Predicted GO |
BP | GO:0044282 | small molecule catabolic process | IEP | Predicted GO |
BP | GO:0046395 | carboxylic acid catabolic process | IEP | Predicted GO |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | Predicted GO |
BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Predicted GO |
BP | GO:1901606 | alpha-amino acid catabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 204 | 252 |
IPR032867 | DYW_dom | 587 | 710 |
IPR002885 | Pentatricopeptide_repeat | 108 | 133 |
IPR002885 | Pentatricopeptide_repeat | 415 | 437 |
IPR002885 | Pentatricopeptide_repeat | 488 | 511 |
IPR002885 | Pentatricopeptide_repeat | 387 | 412 |
IPR002885 | Pentatricopeptide_repeat | 281 | 306 |
IPR002885 | Pentatricopeptide_repeat | 309 | 338 |
No external refs found! |