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  4. Sequence
  5. 84657

84657


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 84657
Cluster HCCA clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
118230 No alias mitochondrial editing factor 22 0.03 Orthogroups_2024-Update
123298 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
171135 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Orthogroups_2024-Update
97289 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
A4A49_13653 No alias pentatricopeptide repeat-containing protein 0.02 Orthogroups_2024-Update
Brara.A00680.1 No alias RNA editing factor *(MEF29) 0.02 Orthogroups_2024-Update
Brara.A02809.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.01G048100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
Glyma.01G176700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G125500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G228000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G080400 No alias mitochondrial editing factor 21 0.02 Orthogroups_2024-Update
Glyma.09G232200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU0Hr1G018170.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G032070.2 No alias Unknown function 0.05 Orthogroups_2024-Update
LOC_Os01g62910 No alias CRR2, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os05g30710 No alias pentatricopeptide, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os07g13540 No alias pentatricopeptide repeat domain containing protein,... 0.02 Orthogroups_2024-Update
MA_16339g0010 No alias (at3g57430 : 548.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
MA_20782g0010 No alias (at5g13230 : 644.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
MA_5481g0010 No alias (at4g18750 : 690.0) Encodes a pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update
MA_87646g0010 No alias (at3g02330 : 723.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
MA_921g0010 No alias (at3g12770 : 484.0) Encodes a pentatricopeptide repeat... 0.02 Orthogroups_2024-Update
Potri.002G175900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.007G050200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Sobic.002G065200.1 No alias RNA editing factor *(CRR28) 0.02 Orthogroups_2024-Update
Sopen01g032600 No alias PPR repeat family 0.01 Orthogroups_2024-Update
Sopen03g038830 No alias PPR repeat family 0.01 Orthogroups_2024-Update
Sopen07g004820 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 370 491
IPR002885 Pentatricopeptide_repeat 195 242
IPR002885 Pentatricopeptide_repeat 87 134
IPR002885 Pentatricopeptide_repeat 58 83
IPR002885 Pentatricopeptide_repeat 165 187
No external refs found!