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  5. 88182

88182


Description : Clathrin, heavy chain


Gene families : OG_42_0001928 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001928_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 88182
Cluster HCCA clusters: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
A4A49_12039 No alias clathrin heavy chain 1 0.02 Orthogroups_2024-Update
Brara.A03422.1 No alias heavy chain of clathrin triskelion 0.02 Orthogroups_2024-Update
Glyma.02G258200 No alias Clathrin, heavy chain 0.01 Orthogroups_2024-Update
evm.model.tig00000042.11 No alias (at3g08530 : 1751.0) Clathrin, heavy chain; FUNCTIONS... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA InterProScan predictions
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA InterProScan predictions
CC GO:0030132 clathrin coat of coated pit IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0004107 chorismate synthase activity IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0016053 organic acid biosynthetic process IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0046394 carboxylic acid biosynthetic process IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000547 Clathrin_H-chain/VPS_repeat 1164 1301
IPR000547 Clathrin_H-chain/VPS_repeat 1312 1452
IPR000547 Clathrin_H-chain/VPS_repeat 1014 1153
IPR000547 Clathrin_H-chain/VPS_repeat 871 995
IPR000547 Clathrin_H-chain/VPS_repeat 574 712
IPR000547 Clathrin_H-chain/VPS_repeat 1460 1598
IPR000547 Clathrin_H-chain/VPS_repeat 721 861
IPR022365 Clathrin_H-chain_propeller_rpt 174 214
IPR015348 Clathrin_H-chain_linker_core 361 384
No external refs found!