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  4. Sequence
  5. 88824

88824


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 88824
Cluster HCCA clusters: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
Bradi1g54840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.J02104.1 No alias RNA editing factor *(RARE1) 0.03 Orthogroups_2024-Update
Glyma.02G087100 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.02 Orthogroups_2024-Update
Glyma.07G196400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
HORVU6Hr1G069210.1 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_16823g0010 No alias (at1g11290 : 694.0) Pentatricopeptide Repeat Protein... 0.03 Orthogroups_2024-Update
Seita.5G405500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc10g054730 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen03g034780 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen03g038010 No alias PPR repeat 0.02 Orthogroups_2024-Update
evm.model.contig_2421.9 No alias (at5g39710 : 153.0) EMBRYO DEFECTIVE 2745 (EMB2745);... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0008483 transaminase activity IEP Predicted GO
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR032867 DYW_dom 536 660
IPR002885 Pentatricopeptide_repeat 232 259
IPR002885 Pentatricopeptide_repeat 204 229
IPR002885 Pentatricopeptide_repeat 337 361
IPR002885 Pentatricopeptide_repeat 362 410
IPR002885 Pentatricopeptide_repeat 127 172
IPR002885 Pentatricopeptide_repeat 261 309
No external refs found!