90123

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Selaginella: 90123
Cluster	HCCA clusters: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method	Actions
Potri.016G065500	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.02	Orthogroups_2024-Update
Sopen03g024500	No alias	PPR repeat	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003725	double-stranded RNA binding	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0051536	iron-sulfur cluster binding	IEP	Predicted GO
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Predicted GO
MF	GO:0051540	metal cluster binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	586	607
IPR002885	Pentatricopeptide_repeat	375	395
IPR002885	Pentatricopeptide_repeat	274	304
IPR002885	Pentatricopeptide_repeat	482	504
IPR002885	Pentatricopeptide_repeat	46	69
IPR002885	Pentatricopeptide_repeat	245	272
IPR002885	Pentatricopeptide_repeat	347	372
IPR002885	Pentatricopeptide_repeat	650	678
IPR032867	DYW_dom	682	806
IPR002885	Pentatricopeptide_repeat	73	120
IPR002885	Pentatricopeptide_repeat	508	552
IPR002885	Pentatricopeptide_repeat	172	218
IPR002885	Pentatricopeptide_repeat	407	455

External Links

No external refs found!