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  5. Sopen01g034310

Sopen01g034310


Description : Retinal pigment epithelial membrane protein


Gene families : OG_42_0000424 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000424_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g034310
Cluster HCCA clusters: Cluster_386

Target Alias Description ECC score Gene Family Method Actions
272067 No alias carotenoid cleavage dioxygenase 1 0.04 Orthogroups_2024-Update
A4A49_18325 No alias carotenoid 9,10(9',10')-cleavage dioxygenase 1 0.08 Orthogroups_2024-Update
A4A49_34874 No alias putative carotenoid cleavage dioxygenase 4, chloroplastic 0.04 Orthogroups_2024-Update
At3g24220 No alias 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic... 0.03 Orthogroups_2024-Update
At4g19170 No alias Probable carotenoid cleavage dioxygenase 4,... 0.03 Orthogroups_2024-Update
Bradi3g52680 No alias nine-cis-epoxycarotenoid dioxygenase 4 0.03 Orthogroups_2024-Update
Bradi4g00330 No alias carotenoid cleavage dioxygenase 1 0.02 Orthogroups_2024-Update
Brara.A01020.1 No alias carotenoid cleavage dioxygenase *(CCD4) & EC_1.13... 0.04 Orthogroups_2024-Update
Brara.A03189.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.02 Orthogroups_2024-Update
Brara.D00005.1 No alias carotenoid cleavage dioxygenase *(CCD1) & EC_1.13... 0.05 Orthogroups_2024-Update
Brara.E02677.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.04 Orthogroups_2024-Update
Brara.I04483.1 No alias carotenoid cleavage dioxygenase *(CCD1) & EC_1.13... 0.02 Orthogroups_2024-Update
Cre03.g149650 No alias carotenoid cleavage dioxygenase 1 0.02 Orthogroups_2024-Update
GRMZM2G057243 No alias carotenoid cleavage dioxygenase 1 0.05 Orthogroups_2024-Update
Glyma.12G236650 No alias carotenoid cleavage dioxygenase 1 0.05 Orthogroups_2024-Update
Glyma.12G236700 No alias carotenoid cleavage dioxygenase 1 0.04 Orthogroups_2024-Update
Glyma.13G202200 No alias carotenoid cleavage dioxygenase 1 0.06 Orthogroups_2024-Update
Glyma.15G250100 No alias nine-cis-epoxycarotenoid dioxygenase 3 0.02 Orthogroups_2024-Update
HORVU5Hr1G000320.2 No alias carotenoid cleavage dioxygenase *(CCD1) & EC_1.13... 0.05 Orthogroups_2024-Update
HORVU6Hr1G068720.4 No alias carotenoid cleavage dioxygenase *(CCD4) & EC_1.13... 0.05 Orthogroups_2024-Update
LOC_Os12g44310 No alias carotenoid cleavage dioxygenase, putative, expressed 0.03 Orthogroups_2024-Update
MA_10425950g0010 No alias (at4g19170 : 581.0) chloroplast-targeted member of a... 0.03 Orthogroups_2024-Update
MA_10434448g0010 No alias (at3g14440 : 592.0) Encodes ... 0.03 Orthogroups_2024-Update
MA_90573g0010 No alias (at4g19170 : 622.0) chloroplast-targeted member of a... 0.03 Orthogroups_2024-Update
Mp7g12990.1 No alias carotenoid cleavage dioxygenase (CCD1) 0.02 Orthogroups_2024-Update
PSME_00033517-RA No alias (at4g19170 : 642.0) chloroplast-targeted member of a... 0.04 Orthogroups_2024-Update
PSME_00056713-RA No alias (at4g19170 : 585.0) chloroplast-targeted member of a... 0.02 Orthogroups_2024-Update
Potri.001G265900 No alias carotenoid cleavage dioxygenase 1 0.03 Orthogroups_2024-Update
Pp1s12_317V6 No alias carotenoid cleavage dioxygenase 1 0.04 Orthogroups_2024-Update
Pp1s132_26V6 No alias carotenoid cleavage dioxygenase 0.04 Orthogroups_2024-Update
Seita.2G035400.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.02 Orthogroups_2024-Update
Seita.3G408300.1 No alias carotenoid cleavage dioxygenase *(CCD1) & EC_1.13... 0.03 Orthogroups_2024-Update
Sobic.001G509200.1 No alias carotenoid cleavage dioxygenase *(CCD1) & EC_1.13... 0.05 Orthogroups_2024-Update
Sobic.002G037400.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.02 Orthogroups_2024-Update
Sobic.004G268500.1 No alias carotenoid cleavage dioxygenase *(CCD4) & EC_1.13... 0.05 Orthogroups_2024-Update
Solyc01g087260 No alias carotenoid cleavage dioxygenase 1B 0.08 Orthogroups_2024-Update
Solyc08g016720 No alias 9-cis-epoxycarotenoid dioxygenase2 0.02 Orthogroups_2024-Update
evm.model.tig00001071.14 No alias (at3g63520 : 102.0) Encodes a protein with... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004294 Carotenoid_Oase 34 511
No external refs found!