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  5. 93321

93321


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Selaginella: 93321
Cluster HCCA clusters: Cluster_214

Target Alias Description ECC score Gene Family Method Actions
181046 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Brara.A01531.1 No alias plastidial RNA splicing factor *(OTP70) 0.03 Orthogroups_2024-Update
Brara.A02809.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.C03290.1 No alias RNA editing factor *(MEF12) 0.04 Orthogroups_2024-Update
Brara.E03135.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.K00505.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os04g53630 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00056947-RA No alias (at2g22070 : 647.0) pentatricopeptide (PPR)... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 426 473
IPR002885 Pentatricopeptide_repeat 225 272
IPR002885 Pentatricopeptide_repeat 326 372
IPR002885 Pentatricopeptide_repeat 629 676
IPR002885 Pentatricopeptide_repeat 21 68
IPR032867 DYW_dom 802 926
IPR002885 Pentatricopeptide_repeat 199 224
IPR002885 Pentatricopeptide_repeat 502 527
IPR002885 Pentatricopeptide_repeat 125 156
IPR002885 Pentatricopeptide_repeat 531 556
IPR002885 Pentatricopeptide_repeat 97 124
IPR002885 Pentatricopeptide_repeat 300 324
IPR002885 Pentatricopeptide_repeat 603 625
IPR002885 Pentatricopeptide_repeat 401 423
IPR002885 Pentatricopeptide_repeat 703 727
No external refs found!