Sopen01g034630

Description : Utp21 specific WD40 associated putative domain

Gene families : OG_42_0007155 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007155_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g034630
Cluster	HCCA clusters: Cluster_294

Target	Alias	Description	ECC score	Gene Family Method
At4g04940	No alias	Putative WD-repeat membrane protein...	0.06	Orthogroups_2024-Update
Bradi1g30580	No alias	transducin family protein / WD-40 repeat family protein	0.11	Orthogroups_2024-Update
Brara.C02742.1	No alias	SSU processome assembly factor *(UTP21)	0.09	Orthogroups_2024-Update
Cre10.g466250	No alias	transducin family protein / WD-40 repeat family protein	0.09	Orthogroups_2024-Update
Glyma.01G001600	No alias	transducin family protein / WD-40 repeat family protein	0.03	Orthogroups_2024-Update
Glyma.08G359600	No alias	transducin family protein / WD-40 repeat family protein	0.04	Orthogroups_2024-Update
HORVU7Hr1G115460.4	No alias	SSU processome assembly factor *(UTP21)	0.03	Orthogroups_2024-Update
Potri.006G078900	No alias	transducin family protein / WD-40 repeat family protein	0.06	Orthogroups_2024-Update
Pp1s207_37V6	No alias	mgc53182 protein	0.07	Orthogroups_2024-Update
Seita.4G201000.1	No alias	SSU processome assembly factor *(UTP21)	0.07	Orthogroups_2024-Update
Sobic.010G205900.1	No alias	SSU processome assembly factor *(UTP21)	0.07	Orthogroups_2024-Update
Solyc01g087670	No alias	Transducin/WD40 repeat protein (AHRD V3.3 *** A0A072UCU5_MEDTR)	0.05	Orthogroups_2024-Update
evm.model.contig_493.12	No alias	(at4g04940 : 260.0) transducin family protein / WD-40...	0.04	Orthogroups_2024-Update
evm.model.tig00021348.51	No alias	(at4g04940 : 484.0) transducin family protein / WD-40...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	InterProScan predictions
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	InterProScan predictions
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001680	WD40_repeat	548	585
IPR024977	Apc4_WD40_dom	190	276
IPR007319	SSU_processome_Utp21	684	903

External Links

No external refs found!