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Description : related to ubiquitin 1
Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Selaginella: 93613 | |
| Cluster | HCCA clusters: Cluster_13 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| At2g36170 | No alias | Ubiquitin-60S ribosomal protein L40-1... | 0.02 | Orthogroups_2024-Update | |
| Bradi2g12280 | No alias | Ribosomal protein S27a / Ubiquitin family protein | 0.04 | Orthogroups_2024-Update | |
| Brara.G01965.1 | No alias | component *(eS31) of small ribosomal-subunit (SSU) proteome | 0.02 | Orthogroups_2024-Update | |
| Glyma.01G029200 | No alias | Ribosomal protein S27a / Ubiquitin family protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.04G231500 | No alias | Ubiquitin supergroup;Ribosomal protein L40e | 0.02 | Orthogroups_2024-Update | |
| Glyma.09G023700 | No alias | Ribosomal protein S27a / Ubiquitin family protein | 0.02 | Orthogroups_2024-Update | |
| Kfl00348_0100 | kfl00348_0100_v1.... | (at2g35635 : 236.0) encodes a ubiquitin-like protein... | 0.02 | Orthogroups_2024-Update | |
| MA_53043g0010 | No alias | (at1g31340 : 234.0) Encodes a ubiquitin-related protein... | 0.03 | Orthogroups_2024-Update | |
| MA_93495g0010 | No alias | (at4g05320 : 654.0) One of five polyubiquitin genes in... | 0.02 | Orthogroups_2024-Update | |
| Mp7g12760.1 | No alias | component RPS27a of SSU proteome | 0.02 | Orthogroups_2024-Update | |
| Potri.002G190000 | No alias | ubiquitin 6 | 0.02 | Orthogroups_2024-Update | |
| Potri.012G024300 | No alias | Ubiquitin supergroup;Ribosomal protein L40e | 0.02 | Orthogroups_2024-Update | |
| Potri.014G115100 | No alias | ubiquitin 6 | 0.02 | Orthogroups_2024-Update | |
| Pp1s72_104V6 | No alias | polyubiquitin | 0.03 | Orthogroups_2024-Update | |
| Seita.9G478400.1 | No alias | component *(eL40) of large ribosomal-subunit (LSU) proteome | 0.02 | Orthogroups_2024-Update | |
| Sobic.009G054800.1 | No alias | component *(eS31) of small ribosomal-subunit (SSU) proteome | 0.02 | Orthogroups_2024-Update | |
| Solyc01g056940 | No alias | Ubiquitin | 0.02 | Orthogroups_2024-Update | |
| Solyc01g096290 | No alias | ubiquitin-ribosomal fusion protein | 0.02 | Orthogroups_2024-Update | |
| Solyc12g099030 | No alias | Ubiquitin, putative (AHRD V3.3 *** B9RN74_RICCO) | 0.02 | Orthogroups_2024-Update | |
| evm.model.tig00022075.50 | No alias | (at3g52590 : 236.0) Ubiquitin extension protein;... | 0.01 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| MF | GO:0005534 | galactose binding | IEP | Predicted GO |
| CC | GO:0005839 | proteasome core complex | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Predicted GO |
| BP | GO:0006396 | RNA processing | IEP | Predicted GO |
| BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
| BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006777 | Mo-molybdopterin cofactor biosynthetic process | IEP | Predicted GO |
| BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
| BP | GO:0008380 | RNA splicing | IEP | Predicted GO |
| BP | GO:0019720 | Mo-molybdopterin cofactor metabolic process | IEP | Predicted GO |
| MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
| MF | GO:0030246 | carbohydrate binding | IEP | Predicted GO |
| BP | GO:0034227 | tRNA thio-modification | IEP | Predicted GO |
| BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043545 | molybdopterin cofactor metabolic process | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| MF | GO:0048029 | monosaccharide binding | IEP | Predicted GO |
| BP | GO:0051189 | prosthetic group metabolic process | IEP | Predicted GO |
| MF | GO:0070003 | threonine-type peptidase activity | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR022617 | Rad60/SUMO-like_dom | 15 | 98 |
| No external refs found! |