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  5. Solyc01g108100

Solyc01g108100


Description : Cold regulated gene 27, putative isoform 1 (AHRD V3.3 *** A0A061DZZ1_THECC)


Gene families : OG_42_0013940 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0013940_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc01g108100
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Sopen01g050330 No alias hypothetical protein 0.06 Orthogroups_2024-Update
Sopen10g021380 No alias hypothetical protein 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!