Sopen01g035710


Description : PPR repeat


Gene families : OG_42_0000146 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000146_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g035710
Cluster HCCA clusters: Cluster_29

Target Alias Description ECC score Gene Family Method Actions
402120 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
406783 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
420704 No alias PENTATRICOPEPTIDE REPEAT 596 0.04 Orthogroups_2024-Update
444770 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
444771 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
At1g80270 No alias PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6] 0.04 Orthogroups_2024-Update
At2g20710 No alias Pentatricopeptide repeat-containing protein At2g20710,... 0.03 Orthogroups_2024-Update
At3g15590 No alias Pentatricopeptide repeat-containing protein At3g15590,... 0.05 Orthogroups_2024-Update
At5g09450 No alias Pentatricopeptide repeat-containing protein At5g09450,... 0.03 Orthogroups_2024-Update
Bradi1g49750 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Bradi2g10850 No alias PENTATRICOPEPTIDE REPEAT 596 0.06 Orthogroups_2024-Update
Bradi5g17360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.B00312.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.C02834.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.F01064.1 No alias RNA editing factor *(POCO) 0.04 Orthogroups_2024-Update
Brara.G02029.1 No alias RNA editing factor *(POCO) 0.05 Orthogroups_2024-Update
GRMZM2G130366 No alias PENTATRICOPEPTIDE REPEAT 596 0.02 Orthogroups_2024-Update
GRMZM2G131817 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G135940 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G160994 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G000600 No alias PENTATRICOPEPTIDE REPEAT 596 0.07 Orthogroups_2024-Update
Glyma.02G011200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.03G108100 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G119200 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.08G176700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.01 Orthogroups_2024-Update
Glyma.12G203800 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Glyma.19G129900 No alias PENTATRICOPEPTIDE REPEAT 596 0.08 Orthogroups_2024-Update
HORVU2Hr1G093220.6 No alias splicing factor *(CRR16) 0.04 Orthogroups_2024-Update
HORVU7Hr1G011310.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g19490 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g46010 No alias PPR repeat domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g12140 No alias PPR repeat domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g35750 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g07260 No alias PPR repeat domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10435629g0010 No alias (at1g60770 : 266.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_77400g0010 No alias (at1g15480 : 202.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
MA_87771g0010 No alias (at1g02150 : 108.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
Potri.002G139400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Orthogroups_2024-Update
Potri.013G132500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.013G132700 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.014G050300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.1 Orthogroups_2024-Update
Potri.016G036100 No alias PENTATRICOPEPTIDE REPEAT 596 0.05 Orthogroups_2024-Update
Seita.2G083900.1 No alias RNA editing factor *(POCO) 0.03 Orthogroups_2024-Update
Seita.2G158100.1 No alias splicing factor *(CRR16) 0.05 Orthogroups_2024-Update
Seita.3G349700.1 No alias splicing factor *(RTP7) 0.04 Orthogroups_2024-Update
Seita.4G018800.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.002G078100.1 No alias RNA editing factor *(POCO) 0.08 Orthogroups_2024-Update
Sobic.003G144000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G100000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G166000.1 No alias splicing factor *(CRR16) 0.02 Orthogroups_2024-Update
Sobic.010G018900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g079320 No alias Pentatricopeptide repeat-containing protein, putative... 0.07 Orthogroups_2024-Update
Solyc01g089870 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.17 Orthogroups_2024-Update
Solyc02g078330 No alias Pentatricopeptide repeat-containing protein, putative... 0.07 Orthogroups_2024-Update
Solyc06g005140 No alias Pentatricopeptide repeat-containing family protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc07g063220 No alias Pentatricopeptide repeat-containing protein, putative... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 291 313
IPR002885 Pentatricopeptide_repeat 362 384
IPR002885 Pentatricopeptide_repeat 185 213
IPR002885 Pentatricopeptide_repeat 398 424
IPR002885 Pentatricopeptide_repeat 221 265
No external refs found!