Solyc01g108410

Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** A0A103XM66_CYNCS)

Gene families : OG_42_0008284 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008284_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Solyc01g108410
Cluster	HCCA clusters: Cluster_229

Target	Alias	Description	ECC score	Gene Family Method	Actions
At5g39710	No alias	Pentatricopeptide repeat-containing protein At5g39710...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	InterProScan predictions
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Predicted GO
CC	GO:0016459	myosin complex	IEP	Predicted GO
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Predicted GO
BP	GO:0044030	regulation of DNA methylation	IEP	Predicted GO
BP	GO:0051052	regulation of DNA metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	680	703
IPR002885	Pentatricopeptide_repeat	706	735
IPR002885	Pentatricopeptide_repeat	443	475
IPR000679	Znf_GATA	933	960
IPR002885	Pentatricopeptide_repeat	377	426
IPR002885	Pentatricopeptide_repeat	236	285
IPR002885	Pentatricopeptide_repeat	552	600
IPR002885	Pentatricopeptide_repeat	308	347
IPR002885	Pentatricopeptide_repeat	482	531
IPR002885	Pentatricopeptide_repeat	622	669

External Links

No external refs found!

Solyc01g108410

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation