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  5. Sopen01g038750

Sopen01g038750


Description : Glycosyl hydrolases family 28


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g038750
Cluster HCCA clusters: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
99190 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
A4A49_18383 No alias putative polygalacturonase 0.04 Orthogroups_2024-Update
At5g41870 No alias At5g41870 [Source:UniProtKB/TrEMBL;Acc:Q9FJ27] 0.03 Orthogroups_2024-Update
Brara.H02383.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Glyma.15G179500 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.18G116400 No alias Pectin lyase-like superfamily protein 0.05 Orthogroups_2024-Update
Kfl00636_0040 kfl00636_0040_v1.1 (at3g42950 : 341.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Pp1s16_66V6 No alias polygalacturonase 0.02 Orthogroups_2024-Update
Sobic.002G090400.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update
Sopen05g028340 No alias Glycosyl hydrolases family 28 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 146 426
No external refs found!