Sopen01g038810

Description : SRF-type transcription factor (DNA-binding and dimerisation domain)

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen01g038810
Cluster	HCCA clusters: Cluster_321

Target	Alias	Description	ECC score	Gene Family Method
GRMZM2G152862	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.02G185500	No alias	AGAMOUS-like 18	0.03	Orthogroups_2024-Update
Glyma.09G149000	No alias	AGAMOUS-like 6	0.02	Orthogroups_2024-Update
PSME_00042999-RA	No alias	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
Sobic.003G027000.1	No alias	MADS/AGL-type transcription factor	0.02	Orthogroups_2024-Update
Solyc06g059970	No alias	TPI	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!