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  5. Sopen01g038900

Sopen01g038900


Description : PPR repeat family


Gene families : OG_42_0008663 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008663_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen01g038900
Cluster HCCA clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Brara.G01923.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Potri.014G090400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Solyc01g095110 No alias Pentatricopeptide repeat superfamily protein, putative... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 656 703
IPR002885 Pentatricopeptide_repeat 410 459
IPR002885 Pentatricopeptide_repeat 551 594
IPR002885 Pentatricopeptide_repeat 302 348
IPR002885 Pentatricopeptide_repeat 470 528
IPR002885 Pentatricopeptide_repeat 616 648
IPR002885 Pentatricopeptide_repeat 372 403
IPR002885 Pentatricopeptide_repeat 270 296
IPR002885 Pentatricopeptide_repeat 192 217
IPR002885 Pentatricopeptide_repeat 159 182
No external refs found!